| Protein: | SO3553 |
| Organism: | Shewanella oneidensis |
| Length: | 588 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3553.
| Description | E-value | Query Range |
Subject Range |
|
|
346.0 | [0..2] | [575..63] |
|
|
338.0 | [0..2] | [575..67] |
|
|
338.0 | [0..2] | [575..67] |
|
|
337.0 | [0..2] | [575..67] |
|
|
337.0 | [0..2] | [575..65] |
|
|
334.0 | [0..3] | [573..70] |
|
|
333.0 | [0..2] | [576..95] |
|
|
331.0 | [0..2] | [575..67] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MDPHVSHSAH LFSLRIAHAL NEACVKDRYS FKRFGQDLLA GLTVGIIAIP LAMALAIASG 60
61 VPPQYGLYTA IVGGFIIAMT GGSRYSVSGP TAAFVVLLYP IAQQFGLAGL LIATVMSGMM 120
121 LVAMAMLRLG RLILYIPESV TLGFTAGIGV VIATLQLKDF FGLQIEHM
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [169-254] |
1 11 21 31 41 51
| | | | | |
1 PEQYFAKLMA LGQALPSLHL PSLFIAAATL ATMLLWPRLK IPVPAHLPAI ALGSILALIL 60
61 NAMGAEIETI GTRFHYQLTD GGIGSG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [255-451] |
1 11 21 31 41 51
| | | | | |
1 IPAVLPHFEW PWLQTGPNGQ AFEFNLAAFQ ALLPAAFAIA MLGAIESLLC AVVLDGMTGK 60
61 RHSANSELLG QGIGNIIAPF FGGIPATAAI ARSAANVKAG AQSPIASMIH ALVVLIGLVA 120
121 LAGILAYLPM SAMAALLLVV AWNMSEAPKA VHLLKTAPTS DILVFLSCFS LTVIFDMVIA 180
181 ISVGIILAAL LFMKEIA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [452-588] |
1 11 21 31 41 51
| | | | | |
1 EMTKLYDISS NKRYVDQSLP ADWAVLKING PLFFAAADRI FAEIASLTQD KQVIVLYLDG 60
61 VSILDAGGLA ALSKLIEKCK LNQTKLLITD LQFQPIRTLA KAKIQPVEGV LKFYPTLREA 120
121 LTEAPSPELE ATPEATD
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1sboA |
| Description: | Solution Structure of putative anti sigma factor antagonist from Thermotoga maritima (TM1442) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.76935925638807 | bayes_pls_golite062009 |
| protein binding | 1.39062728142841 | bayes_pls_golite062009 |
