YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3157
Organism:	Shewanella oneidensis
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3157.

Description	E-value	Query Range	Subject Range
gi\|54309850, gi\|... - gi\|54309850\|ref\|YP_130870.1\| lipoprotein [Photobacterium profundum SS9], gi\|46914288\|emb\|CAG21068.1\|...	336.0	[0..1]	[235..1]
gi\|78687126, gi\|... - gi\|78687126\|ref\|ZP_00851882.1\| lipoprotein, putative [Shewanella sp. ANA-3], gi\|78505126\|gb\|EAP18663...	334.0	[0..1]	[236..1]
gi\|82495296, gi\|... - gi\|82495296\|ref\|ZP_00880873.1\| lipoprotein, putative [Shewanella sp. MR-4], gi\|82406799\|gb\|EAP47462....	328.0	[0..1]	[235..1]
gi\|78690303, gi\|... - gi\|78690303\|ref\|ZP_00854952.1\| lipoprotein, putative [Shewanella sp. MR-7], gi\|78510332\|gb\|EAP23705....	326.0	[0..1]	[235..1]
gi\|90410694, gi\|... - gi\|90410694\|ref\|ZP_01218709.1\| hypothetical lipoprotein [Photobacterium profundum 3TCK], gi\|90328325...	314.0	[0..1]	[235..1]
gi\|126175065, gi... - gi\|68544321\|ref\|ZP_00583977.1\| lipoprotein, putative [Shewanella baltica OS155], gi\|68517967\|gb\|EAN4...	304.0	[0..1]	[236..1]
gi\|82741352, gi\|... - gi\|82741352\|ref\|ZP_00904075.1\| lipoprotein, putative [Shewanella sp. W3-18-1], gi\|82721281\|gb\|EAP561...	304.0	[0..1]	[236..1]
gi\|145565307, gi... - gi\|77814082\|ref\|ZP_00813348.1\| lipoprotein, putative [Shewanella putrefaciens CN-32], gi\|77810827\|gb...	302.0	[0..1]	[236..1]
gi\|160861638, gi... - gi\|160876116\|ref\|YP_001555432.1\| putative lipoprotein [Shewanella baltica OS195], gi\|160861638\|gb\|AB...	300.0	[0..1]	[235..1]
gi\|37197254, gi\|... - gi\|37678514\|ref\|NP_933123.1\| hypothetical protein VV0330 [Vibrio vulnificus YJ016], gi\|37197254\|dbj\|...	298.0	[0..3]	[235..10]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIYKRLFPF IAASAVCLSL SGCSQRISAL NDTVKLAFWG NEDIVLSPEQ VSANPYASIY  60
   61 VKIEDTAQAF VVLAFAEPKI SLSSVKNSPE ELELKWLSAD KGMLVTVNGR LVKTHNLLTG 120
  121 NLAAVESDEP DPLLLGLHLS STPKTWTRML DWQPGYHYSY KVKSEFKLIS DDNILINGTP 180
  181 TQALHFSESV SVDALNIQYQ NEFWLDPQTG SVIKSHQKIA PNLPFIDITL LKPFAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.221849
Match:	2in5A
Description:	No description for 2in5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits