YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2564
Organism:	Shewanella oneidensis
Length:	515 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2564.

Description	E-value	Query Range	Subject Range
gi\|114047734, gi... - gi\|114047734\|ref\|YP_738284.1\| MltD domain-containing protein [Shewanella sp. MR-7], gi\|113889176\|gb\|...	315.0	[0..1]	[515..1]
gi\|82403472, gi\|... - gi\|82498542\|ref\|ZP_00884032.1\| Peptidoglycan-binding LysM [Shewanella sp. MR-4], gi\|82403472\|gb\|EAP4...	313.0	[0..1]	[515..1]
gi\|88772635, gi\|... - gi\|88796049\|ref\|ZP_01111734.1\| putative membrane-bound lytic murein transglycosylase [Alteromonas ma...	309.0	[0..34]	[515..72]
gi\|90021669, gi\|... - gi\|90021669\|ref\|YP_527496.1\| low molecular weight phosphotyrosine protein phosphatase [Saccharophagu...	308.0	[0..3]	[514..14]
gi\|82744357, gi\|... - gi\|82744357\|ref\|ZP_00906922.1\| Peptidoglycan-binding LysM [Shewanella sp. W3-18-1], gi\|82718284\|gb\|E... gi\|145564565, gi... - gi\|146292875\|ref\|YP_001183299.1\| MltD domain-containing protein [Shewanella putrefaciens CN-32], gi\|...	305.0	[0..1]	[515..1]
gi\|254845073, gi... - gi\|75831263\|ref\|ZP_00760528.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|183179463, gi... - gi\|183179463\|ref\|ZP_02957674.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae MZO-... gi\|254286454, gi... - gi\|254286454\|ref\|ZP_04961411.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae AM-1... gi\|149741019, gi... - gi\|153825335\|ref\|ZP_01978002.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae MZO-... gi\|153829937, gi... - gi\|153829937\|ref\|ZP_01982604.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae 623-... gi\|121549551, gi... - gi\|121586285\|ref\|ZP_01676075.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae 2740... gi\|229369847, gi... - gi\|229607192\|ref\|YP_002877840.1\| membrane-bound lytic murein transglycosylase D precursor [Vibrio ch... gi\|124115733, gi... - gi\|153213809\|ref\|ZP_01949017.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae 1587... gi\|229332533, gi... - gi\|229528759\|ref\|ZP_04418149.1\| membrane-bound lytic murein transglycosylase D precursor [Vibrio cho... gi\|124119829, gi... - gi\|153221300\|ref\|ZP_01952315.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae MAK ... gi\|229519252, gi... - gi\|229519252\|ref\|ZP_04408695.1\| membrane-bound lytic murein transglycosylase D precursor [Vibrio cho... gi\|9656796, gi\|1... - gi\|9656796\|gb\|AAF95381.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae O1 biovar ... gi\|153817123, gi... - gi\|153817123\|ref\|ZP_01969790.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae NCTC... gi\|229355193, gi... - gi\|229507688\|ref\|ZP_04397193.1\| membrane-bound lytic murein transglycosylase D precursor [Vibrio cho... gi\|11355651 - pir\|\|B82102 membrane-bound lytic murein transglycosylase D VC2237 [imported] - Vibrio cholerae (stra... gi\|229512117, gi... - gi\|229512117\|ref\|ZP_04401596.1\| membrane-bound lytic murein transglycosylase D precursor [Vibrio cho... gi\|227082361, gi... - gi\|227082361\|ref\|YP_002810912.1\| membrane-bound lytic murein transglycosylase D [Vibrio cholerae M66... gi\|146315687, gi... - gi\|75827527\|ref\|ZP_00756962.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|75824350, gi\|... - gi\|75824350\|ref\|ZP_00753807.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|254225772, gi... - gi\|75820870\|ref\|ZP_00750908.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory... gi\|75817020, gi\|... - gi\|75817020\|ref\|ZP_00747476.1\| COG0741: Soluble lytic murein transglycosylase and related regulatory...	304.0	[0..1]	[515..1]
gi\|78503970, gi\|... - gi\|78688284\|ref\|ZP_00852992.1\| Peptidoglycan-binding LysM [Shewanella sp. ANA-3], gi\|78503970\|gb\|EAP...	303.0	[0..13]	[515..2]
gi\|78361395, gi\|... - gi\|78366605\|ref\|ZP_00836884.1\| Peptidoglycan-binding LysM:SLT:MLTD_N [Shewanella sp. PV-4], gi\|78361...	298.0	[0..1]	[513..1]
gi\|85713108, gi\|... - gi\|85713108\|ref\|ZP_01044142.1\| Soluble lytic murein transglycosylase [Idiomarina baltica OS145], gi\|...	298.0	[0..3]	[515..8]
gi\|113906020, gi... - gi\|160875172\|ref\|YP_001554488.1\| MltD domain-containing protein [Shewanella baltica OS195], gi\|16086...	298.0	[0..1]	[515..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSLYVVVG GFALLTGCQT LDNHQVTKPE AQTVTTENTV PQYYLATEPE SAQVTDVWER  60
   61 IRQGMQLPVP DKKLVNYYRD WYINNPKHLE VISERAAPYM YLIVEELEKR HLPIEIALLP 120
  121 IIESAFDPSA SSASAASGLW QFTTPMASHF GLEMNWWYDG RRDVPASTTA ALDMLEYLYN 180
  181 KTNNNWLYAI AAYNTGESKV LNAIKRNEDK GLKTDFWSLD LPKETKRYVP QLLALAEVIK 240
  241 HADEYGITLA PINNSPSIEV V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [262-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIDSQIDLAM AAGLANMTTT ELAKLNPGYN RWATSPLGPH TLVLPIDKSE EFKKALAETE  60
   61 SEARVSWLRY TIKSGDSIGS IAQKHHTTVN AIRAANGMKS NNIVAGRHLI IPVSADDKQL 120
  121 YALSTSQKLP KKAAGATSGN KLTYQVKSGD SLWQIAQAHN VSVKQLTAWN HLSKDSKLQT 180
  181 GQKLTIVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [450-515]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQEKLDSEHI RTVSYKVKSG DSLAQIASKF KVTVAELLEW NSLTPSQYIL PGQVLKLVVD  60
   61 ESNLNA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.32
Match:	2djpA
Description:	No description for 2djpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: