YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2222
Organism:	Shewanella oneidensis
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2222.

Description	E-value	Query Range	Subject Range
gi\|194562900, gi... - gi\|84362315\|ref\|ZP_00986943.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	768.0	[0..10]	[516..1]
gi\|23105040 - ref\|ZP_00091498.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-termina... gi\|67086112, gi\|... - gi\|67156353\|ref\|ZP_00417946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	766.0	[0..10]	[512..1]
gi\|134139536, gi... - gi\|67549752\|ref\|ZP_00427601.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	766.0	[0..5]	[516..7]
gi\|77460673, gi\|... - gi\|77460673\|ref\|YP_350180.1\| fumarase [Pseudomonas fluorescens Pf0-1], gi\|77384676\|gb\|ABA76189.1\| pu...	765.0	[0..10]	[514..1]
gi\|46311492, gi\|... - gi\|78066992\|ref\|YP_369761.1\| fumarase [Burkholderia sp. 383], gi\|77967737\|gb\|ABB09117.1\| fumarase [B...	763.0	[0..10]	[516..1]
gi\|72119332, gi\|... - gi\|73541919\|ref\|YP_296439.1\| fumarase [Ralstonia eutropha JMP134], gi\|72119332\|gb\|AAZ61595.1\| fumara...	763.0	[0..10]	[516..1]
gi\|116648304, gi... - gi\|67664674\|ref\|ZP_00461946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro... gi\|67095365, gi\|... - gi\|67657097\|ref\|ZP_00454477.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	763.0	[0..10]	[516..1]
gi\|194558696, gi... - gi\|84355180\|ref\|ZP_00980069.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	763.0	[0..10]	[516..1]
gi\|70732126, gi\|... - gi\|70732126\|ref\|YP_261882.1\| fumarate hydratase, class I, putative [Pseudomonas fluorescens Pf-5], g...	763.0	[0..10]	[514..1]
gi\|153839220, gi... - gi\|153839220\|ref\|ZP_01991887.1\| fumarate hydratase, class I [Vibrio parahaemolyticus AQ3810], gi\|149... gi\|28806865, gi\|... - gi\|28898647\|ref\|NP_798252.1\| fumarate hydratase, class I [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|91224279, gi\|... - gi\|91224279\|ref\|ZP_01259541.1\| fumarate hydratase, class I [Vibrio alginolyticus 12G01], gi\|91190621... gi\|254228146, gi... - gi\|75856978\|ref\|ZP_00764598.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ... gi\|28806865 - gi\|28806865\|dbj\|BAC60136.1\| fumarate hydratase, class I [Vibrio parahaemolyticus RIMD 2210633]	763.0	[0..10]	[514..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHHETSEN VVIKQADFIE SVADALQYIS YYHPKDFVDA MSEAYEREQS AAAKDAIAQI  60
   61 LINSRMSAEG KRPLCQDTGI VTTFVKVGMG VKWDKTDMTI QQMVDEGVRR AYTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNPLRASIV ADPAGSRKNT KDNTPSVVHI DMVPGNHVEV AIAAKGGGSE NKAKMVMLNP  60
   61 SDDIAAWVEK TLPTMGAGWC PPGMLGIGIG GTAEKAAVLA KEALMESVDI HELMARGAQT 120
  121 TEEKLRLDIF ERANNLGIGA QGLGGLTTVL DVKIKSAPTH AASKPVVMIP NCAATRHVHF 180
  181 HLDGTGPADL APP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [308-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSDWPEITR EVGSDVRRVN LDTVTQADIE QWQSGETLLL SGKMLTGRDA AHKRIQSLIE  60
   61 SGEGLPEGVD FTGKFIYYVG PVDPVGNEVV GPAGPTTATR MDKFTDLMLD KTGLMGMIGK 120
  121 AERGPATVES IKKHKAVYLM AVGGAAYLVS KAIKKSRVVA FADLGMEAIY EFDVQDMPVT 180
  181 VAVDSNGVNA HETGPAIWKV NIANANAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	2isbA
Description:	No description for 2isbA was found.

Predicted functions:

Term	Confidence	Notes
fumarate hydratase activity	4.07646355358082	bayes_pls_golite062009
catalytic activity	1.02123395223799	bayes_pls_golite062009
hydro-lyase activity	0.556078290190932	bayes_pls_golite062009
carbon-oxygen lyase activity	0.338858403016763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: