YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1776
Organism:	Shewanella oneidensis
Length:	697 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1776.

Description	E-value	Query Range	Subject Range
gi\|68544037, gi\|... - gi\|68544037\|ref\|ZP_00583714.1\| outer membrane protein precursor MtrB [Shewanella baltica OS155], gi\|...	907.0	[0..1]	[697..1]
gi\|113885531, gi... - gi\|82497715\|ref\|ZP_00883244.1\| outer membrane protein precursor MtrB [Shewanella sp. MR-4], gi\|82404...	905.0	[0..1]	[697..1]
gi\|78506643, gi\|... - gi\|78685525\|ref\|ZP_00850302.1\| outer membrane protein precursor MtrB [Shewanella sp. ANA-3], gi\|7850...	905.0	[0..1]	[697..1]
gi\|160874727, gi... - gi\|160874727\|ref\|YP_001554043.1\| outer membrane protein precursor MtrB [Shewanella baltica OS195], g...	904.0	[0..1]	[697..1]
gi\|28375579 - gi\|28375579\|emb\|CAD66550.1\| outer membrane protein [Shewanella frigidimarina NCIMB 400] gi\|28375579 - gi\|28375579\|emb\|CAD66550.1\| outer membrane protein [Shewanella frigidimarina NCIMB 400]	903.0	[0..1]	[697..1]
gi\|114048072, gi... - gi\|78689457\|ref\|ZP_00854119.1\| outer membrane protein precursor MtrB [Shewanella sp. MR-7], gi\|78511...	903.0	[0..1]	[697..1]
gi\|82721045, gi\|... - gi\|82741571\|ref\|ZP_00904289.1\| outer membrane protein precursor MtrB [Shewanella sp. W3-18-1], gi\|82...	885.0	[0..1]	[697..1]
gi\|77809883, gi\|... - gi\|77815121\|ref\|ZP_00814363.1\| outer membrane protein precursor MtrB [Shewanella putrefaciens CN-32]...	857.0	[0..1]	[697..1]
gi\|78360371, gi\|... - gi\|78367510\|ref\|ZP_00837777.1\| outer membrane protein precursor MtrB [Shewanella sp. PV-4], gi\|78360...	845.0	[0..1]	[697..1]

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Predicted Domain #1

Region A:
Residues: [1-697]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKLNLITL ALLANTGLAV AADGYGLANA NTEKVKLSAW SCKGCVVETG TSGTVGVGVG  60
   61 YNSEEDIRSA NAFGTSNEVA GKFDADLNFK GEKGYRASVD AYQLGMDGGR LDVNAGKQGQ 120
  121 YNVNVNYRQI ATYDSNSALS PYAGIGGNNL TLPDNWITAG SSNQMPLLMD SLNALELSLK 180
  181 RERTGLGFEY QGESLWSTYV NYMREEKTGL KQASGSFFNQ SMMLAEPVDY TTDTIEAGVK 240
  241 LKGDRWFTAL SYNGSIFKNE YNQLDFENAF NPTFGAQTQG TMALDPDNQS HTVSLMGQYN 300
  301 DGSNALSGRI LTGQMSQDQA LVTDNYRYAN QLNTDAVDAK VDLLGMNLKV VSKVSNDLRL 360
  361 TGSYDYYDRD NNTQVEEWTQ ISINNVNGKV AYNTPYDNRT QRFKVAADYR ITRDIKLDGG 420
  421 YDFKRDQRDY QDRETTDENT VWARLRVNSF DTWDMWVKGS YGNRDGSQYQ ASEWTSSETN 480
  481 SLLRKYNLAD RDRTQVEARI THSPLESLTI DVGARYALDD YTDTVIGLTE SKDTSYDANI 540
  541 SYMITADLLA TAFYNYQTIE SEQAGSSNYS TPTWTGFIED QVDVVGAGIS YNNLLENKLR 600
  601 LGLDYTYSNS DSNTQVRQGI TGDYGDYFAK VHNINLYAQY QATEKLALRF DYKIENYKDN 660
  661 DAANDIAVDG IWNVVGFGSN SHDYTAQMLM LSMSYKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.92
Match:	1qffA
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	1.25656963172568	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: