YRC Public Data Repository - Protein Structure Prediction

Protein:	dj-PA
Organism:	Drosophila melanogaster
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dj-PA.

Description	E-value	Query Range	Subject Range
gi\|42519684, gi\|... - gi\|42519684\|ref\|NP_965614.1\| hypothetical protein LJ0641 [Lactobacillus johnsonii NCC 533], gi\|41583...	136.0	[0..32]	[244..1273]
gi\|109484624 - gi\|109484624\|ref\|XP_001068135.1\| PREDICTED: similar to transmembrane protease, serine 4 [Rattus norv...	135.0	[0..31]	[244..105]
gi\|37528750 - gi\|37528750\|gb\|AAQ92320.1\| elafin [Ovis aries]	129.0	[0..55]	[236..56]
gi\|1906025 - gi\|1906025\|gb\|AAC05722.1\| sperm-specific protein component [Drosophila melanogaster]	126.0	[0..1]	[127..1]
OAM_ASCSU - Ovarian abundant message protein OS=Ascaris suum GN=OAM PE=2 SV=1 gi\|477260, gi\|159673 - gi\|477260\|pir\|\|A48461 ovarian abundant message protein oam - common roundworm, gi\|159673\|gb\|AAA73355...	120.0	[0..45]	[244..16]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRTALILR RCFQPTFIRP HHINVLENFK EADDLPNQGQ AKFVDVSIHD PQHIRSALVS  60
   61 PMQRKFLQDL EQQQTVRIKW FKEGNQDELE NMKNECRRLA LEIIMAAKGG DIKKACKELA 120
  121 EKEKCKQIEL KKKCKELEKK TKCAKKDPCK KKDPCKKKDP CKKKDPCKKK DPCKKKDPCK 180
  181 KKDPCKKKDP CKKKGGDLKK KCKKLAEKEK CKKLAKKEKM KKLQKKCKKM AQKEKCKKMA 240
  241 KKDKCKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits