YRC Public Data Repository - Protein Structure Prediction

Protein:	DEOC_THETN
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOC_THETN.

Description	E-value	Query Range	Subject Range
gi\|56421034, gi\|... - gi\|56421034\|ref\|YP_148352.1\| deoxyribose-phosphate aldolase [Geobacillus kaustophilus HTA426], gi\|56...	266.0	[0..9]	[224..53]
DEOC_PYRKO - Probable deoxyribose-phosphate aldolase OS=Pyrococcus kodakaraensis GN=deoC PE=3 SV=1 DEOC_THEKO - Deoxyribose-phosphate aldolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)...	264.0	[0..8]	[224..3]
DEOC_CARHZ - Deoxyribose-phosphate aldolase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 ...	260.0	[0..10]	[227..6]
DEOC_CALS8 - Deoxyribose-phosphate aldolase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903...	256.0	[0..7]	[224..2]
DEOC_GEOKA - Deoxyribose-phosphate aldolase OS=Geobacillus kaustophilus (strain HTA426) GN=deoC PE=3 SV=2 DEOC_GEOKA - Deoxyribose-phosphate aldolase OS=Geobacillus kaustophilus GN=deoC PE=3 SV=2	250.0	[0..9]	[224..3]
DEOC_STAHJ - Deoxyribose-phosphate aldolase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=deoC PE=3 SV=1	248.0	[0..9]	[227..1]
DEOC_TREDE - Deoxyribose-phosphate aldolase OS=Treponema denticola GN=deoC PE=3 SV=1 DEOC_TREDE - Deoxyribose-phosphate aldolase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) G...	248.0	[0..9]	[224..1]
gi\|89084799, gi\|... - gi\|89100456\|ref\|ZP_01173318.1\| deoxyribose phosphate aldolase [Bacillus sp. NRRL B-14911], gi\|890847...	248.0	[0..10]	[225..13]
gi\|80977211, gi\|... - gi\|81096736\|ref\|ZP_00875069.1\| Deoxyribose-phosphate aldolase [Streptococcus suis 89/1591], gi\|80977...	248.0	[0..9]	[229..1]
DEOC_THEMA - Deoxyribose-phosphate aldolase OS=Thermotoga maritima GN=deoC PE=1 SV=1 DEOC_THEMA - Deoxyribose-phosphate aldolase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 100...	247.0	[0..3]	[224..23]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKEESLMN IAKMIDHTLL KPNATKEEIK KVCEEAREYG FASVCINPCF VDLAYEMLKD  60
   61 TDVKVCTVVG FPLGANTIET KVVEAVEAVK KGATEIDMVL NISMLKSGEY DYVKKEIGEV 120
  121 VKAVKSHGDI VVKVILETCY LSDEEKIKAC EISKEAGADF VKTSTGFGPG GATVEDVKLM 180
  181 RKVVGENFGV KASGGIRSYE DAKAMIEAGA NRIGASAGVK IVEEWKKQGL G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	1o0yA
Description:	Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.67031204377352	bayes_pls_golite062009
deoxyribose-phosphate aldolase activity	2.42732299324236	bayes_pls_golite062009
kinase activity	1.94076427145239	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.57588823292155	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.53236719840557	bayes_pls_golite062009
transaldolase activity	1.20024248197006	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: