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View Structure Prediction Details

Protein: DAPB_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii
Length: 273 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPB_PHOLL.

Description E-value Query
Range
Subject
Range
gi|78485217, gi|... - gi|78485217|ref|YP_391142.1| dihydrodipicolinate reductase [Thiomicrospira crunogena XCL-2], gi|7836...
302.0 [0..6] [270..1]

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Predicted Domain #1
Region A:
Residues: [1-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTDIRVAI VGAGGRMGRQ LIQAIYQLDG VALGAALERS GSSLIGADAG ELAGIGHNGV  60
   61 TVCDDLTSIV DDFDILIDFT RPEGTLTHLE ICRQNGKAIV IGTTGFDEAG KQAIKQASAD 120
  121 IPIVFAANFS VGVNLVLKLL EKAAKVMGEY SDIEIIEAHH RHKVDAPSGT ALAMGESIAH 180
  181 ALGRDLKACA VYAREGYTGE RDPKSIGFAT IRAGDIVGEH TAMFADIGER VEITHKASSR 240
  241 MTFANGAVKA ALWLSGKNSG LFDMKDVLNL DLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.0
Match: 1arzA
Description: Dihydrodipicolinate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 2.60548927745815 bayes_pls_golite062009
catalytic activity 2.54843319568228 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.54909195188343 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 0.841370849960815 bayes_pls_golite062009
saccharopine dehydrogenase activity 0.495113665163626 bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity 0.0651785123513661 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle