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View Structure Prediction Details

Protein: CSF2_CEREL
Organism: Cervus elaphus
Length: 144 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSF2_CEREL.

Description E-value Query
Range
Subject
Range
CSF2_SHEEP - Granulocyte-macrophage colony-stimulating factor OS=Ovis aries GN=CSF2 PE=2 SV=1
287.0 [0..1] [144..1]
gi|62825818 - gi|62825818|gb|AAY16326.1| granulocyte-macrophage colony stimulating factor [Capra hircus]
285.0 [0..1] [144..1]
CSF2_RAT - Granulocyte-macrophage colony-stimulating factor OS=Rattus norvegicus GN=Csf2 PE=2 SV=2
282.0 [0..1] [144..1]
gi|22208938 - gi|22208938|gb|AAL41017.2|AF448481_1 granulocyte-macrophage colony-stimulating factor [Equus caballu...
278.0 [0..1] [144..1]
gi|77415425 - gi|77415425|gb|AAH98642.2| Chia protein [Rattus norvegicus]
CSF2 - colony stimulating factor 2 (granulocyte-macrophage)
278.0 [0..1] [144..1]
gi|18071637 - gi|18071637|gb|AAL55394.1| granulocyte/macrophage colony stimulating factor [Sigmodon hispidus]
277.0 [0..1] [144..1]
gi|74136451, gi|... - gi|74136451|ref|NP_001028121.1| granulocyte-macrophage colony-stimulating factor [Macaca mulatta], g...
276.0 [0..1] [144..1]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLQNLLLLG TVVCSFSAPT RPASPVTRPW QHVDAIKEAL SLLNHSSDTA AVMNETVEVV  60
   61 SEMFDSQEPT CLQTRLKLYK QGLRGSLTSL SGSLTMMARH YEQHCPPTQE TSCETQTITF 120
  121 KSFKENLKDF LFIIPFDCWE PAQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.39794
Match: 1csgA
Description: Granulocyte-macrophage colony-stimulating factor (GM-CSF)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle