YRC Public Data Repository - Protein Structure Prediction

Protein:	COX6C_TARSY
Organism:	Tarsius syrichta
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX6C_TARSY.

Description	E-value	Query Range	Subject Range
gi\|76636064 - gi\|76636064\|ref\|XP_615264.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2 [Bos tauru...	132.0	[0..3]	[73..2]
gi\|94393998, gi\|... - gi\|94393998\|ref\|XP_988746.1\| PREDICTED: similar to cytochrome c oxidase, subunit VIc [Mus musculus],...	122.0	[0..2]	[75..3]
gi\|109772 - pir\|\|S16083 cytochrome-c oxidase (EC 1.9.3.1) chain VIc - mouse CX6C2_RAT - Cytochrome c oxidase subunit 6C-2 OS=Rattus norvegicus GN=Cox6c2 PE=1 SV=3 COX6C_VICPA - Cytochrome c oxidase subunit 6C OS=Vicugna pacos GN=COX6C PE=3 SV=1	122.0	[0..1]	[75..1]
gi\|58332062, gi\|... - gi\|58332062\|ref\|NP_001011180.1\| cytochrome c oxidase subunit VIc [Xenopus (Silurana) tropicalis], gi...	119.0	[0..1]	[75..1]
ENSMMUG000000001... - null, null COX6C_MACSL - Cytochrome c oxidase subunit 6C OS=Macaca silenus GN=COX6C PE=3 SV=1	119.0	[0..1]	[75..1]
gi\|50731775 - gi\|50731775\|ref\|XP_418355.1\| PREDICTED: hypothetical protein [Gallus gallus]	119.0	[0..1]	[74..26]
gi\|46329625 - gi\|46329625\|gb\|AAH68914.1\| MGC83130 protein [Xenopus laevis]	118.0	[0..1]	[75..1]
gi\|73974092, gi\|... - gi\|73974092\|ref\|XP_856090.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2 isoform 2 ...	118.0	[0..1]	[75..1]
gi\|109075476 - gi\|109075476\|ref\|XP_001097441.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc precurso...	118.0	[0..1]	[75..1]

Back

Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGALTKPQ MRGLLAKRLR FHIVGAFAVS LGVAAFYKFA VAEPRKKAYA DFYRNYDSMK  60
   61 DFEEMRKAGI FQSAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1occI
Description:	Mitochondrial cytochrome c oxidase subunit VIc
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	6.15474255278595	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	6.15474255278595	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	6.15474255278595	bayes_pls_golite062009
heme-copper terminal oxidase activity	5.9315600767816	bayes_pls_golite062009
oxidoreductase activity	3.73725437978909	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	1.90371234725302	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	1.77275186460981	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.22289460056938	bayes_pls_golite062009
cation transmembrane transporter activity	1.08679012291095	bayes_pls_golite062009
ion transmembrane transporter activity	0.939360852609734	bayes_pls_golite062009
catalytic activity	0.364912245438605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: