YRC Public Data Repository - Protein Structure Prediction

Protein:	CX6A2_BOVIN
Organism:	Bos taurus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX6A2_BOVIN.

Description	E-value	Query Range	Subject Range
CX6A2_MOUSE - Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus GN=Cox6a2 PE=1 SV=2	160.0	[0..1]	[97..1]
gi\|73958262, gi\|... - gi\|73958262\|ref\|XP_856206.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIa-heart, mitoc...	155.0	[0..1]	[97..1]
CX6A2_RAT - Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment) OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3	154.0	[0..4]	[97..1]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	153.0	[0..6]	[95..18]
gi\|109128339 - gi\|109128339\|ref\|XP_001112927.1\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide ...	151.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPLKSLSR GLASAAKGDH GGTGARTWRF LTFGLALPSV ALCTLNSWLH SGHRERPAFI  60
   61 PYHHLRIRTK PFSWGDGNHT FFHNPRVNPL PTGYEKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1v54G
Description:	Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	3.07475068443038	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.89992596202553	bayes_pls_golite062009
cytochrome-c oxidase activity	2.649228337016	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	2.649228337016	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	2.649228337016	bayes_pls_golite062009
heme-copper terminal oxidase activity	2.42178905939564	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.1664879861089	bayes_pls_golite062009
oxidoreductase activity	1.6426467225342	bayes_pls_golite062009
cation transmembrane transporter activity	0.880730101421521	bayes_pls_golite062009
ion transmembrane transporter activity	0.700401744526865	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: