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View Structure Prediction Details

Protein: COL14_ARATH
Organism: Arabidopsis thaliana
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COL14_ARATH.

Description E-value Query
Range
Subject
Range
gi|225898565, gi... - gi|42571031|ref|NP_973589.1| zinc finger (B-box type) family protein [Arabidopsis thaliana], gi|2258...
375.0 [0..1] [402..1]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK  60
   61 EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF SGCPSVLELA AVWGIDLKGK 120
  121 KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK Q

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #2
Region A:
Residues: [162-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFSFGRSKQV VFEQLELLKR GFVEGEGEIM VPEGINGGGS ISQPSPTTSF TSLLMSQSLC  60
   61 GNGMQWNATN HSTGQNTQIW DFNLGQSRNP DEPSPVETKG ST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [264-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTFNNVTHLK NDTRTTNMNA FKESYQQEDS VHSTSTKGQE TSKSNNIPAA IHSHKSSNDS  60
   61 CGLHCTEHIA ITSNRATRLV AVTNADLEQM AQNRDNAMQR YKEKKKTRRY DKTIRYETRK 120
  121 ARAETRLRVK GRFVKATDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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