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View Structure Prediction Details

Protein: COL14_ARATH
Organism: Arabidopsis thaliana
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COL14_ARATH.

Description E-value Query
Range
Subject
Range
gi|225898565, gi... - gi|42571031|ref|NP_973589.1| zinc finger (B-box type) family protein [Arabidopsis thaliana], gi|2258...
375.0 [0..1] [402..1]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK  60
   61 EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF SGCPSVLELA AVWGIDLKGK 120
  121 KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK Q

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #2
Region A:
Residues: [162-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFSFGRSKQV VFEQLELLKR GFVEGEGEIM VPEGINGGGS ISQPSPTTSF TSLLMSQSLC  60
   61 GNGMQWNATN HSTGQNTQIW DFNLGQSRNP DEPSPVETKG ST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [264-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTFNNVTHLK NDTRTTNMNA FKESYQQEDS VHSTSTKGQE TSKSNNIPAA IHSHKSSNDS  60
   61 CGLHCTEHIA ITSNRATRLV AVTNADLEQM AQNRDNAMQR YKEKKKTRRY DKTIRYETRK 120
  121 ARAETRLRVK GRFVKATDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle