YRC Public Data Repository - Protein Structure Prediction

Protein:	CH16_DROVI
Organism:	Drosophila virilis
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CH16_DROVI.

Description	E-value	Query Range	Subject Range
CH16_DROGR - Chorion protein S16 OS=Drosophila grimshawi GN=Cp16 PE=3 SV=1	207.0	[0..1]	[139..1]
CH16_DROSU - Chorion protein S16 OS=Drosophila subobscura GN=Cp16 PE=3 SV=1	200.0	[0..1]	[138..1]
gi\|195491080, gi... - gi\|33328989\|gb\|AAQ09901.1\| Cp16 [Drosophila yakuba], gi\|195491080\|ref\|XP_002093409.1\| Cp16 [Drosophi...	188.0	[0..1]	[138..1]
gi\|134305204, gi... - gi\|7724\|emb\|CAA34686.1\| chorion protein s16 [Drosophila melanogaster], gi\|134305210\|gb\|ABO71742.1\| c...	188.0	[0..1]	[138..1]
gi\|54641846, gi\|... - gi\|54641846\|gb\|EAL30596.1\| GA19666-PA [Drosophila pseudoobscura], gi\|125978124\|ref\|XP_001353095.1\| G...	184.0	[0..1]	[138..1]
gi\|66803899, gi\|... - gi\|66803899\|gb\|AAY56648.1\| chorion protein 16 [Drosophila simulans], gi\|134305246\|gb\|ABO71760.1\| cho...	180.0	[0..1]	[138..1]
gi\|6900011 - gi\|6900011\|emb\|CAB71297.1\| chorion protein s16 [Ceratitis capitata]	110.0	[0..8]	[118..5]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNYMRLLC LMACCFSVCL AYRPSGNSYR SGGYGEYIKP VETAEAQAAA LTNAAGAAAS  60
   61 SAKLDGADWY ALNRYGWEQG KPLLVKPYGP LDNLYAAALP PRAFVAEIDP VFKRNSYGGA 120
  121 YGERTVTLNT GSKLAVSAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	99.853872
Match:	PF05836.3
Description:	No description for PF05836.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.818	N/A	N/A	a.24.26	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits