YRC Public Data Repository - Protein Structure Prediction

Protein:	CALCA_HORSE
Organism:	Equus caballus
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALCA_HORSE.

Description	E-value	Query Range	Subject Range
gi\|109107198 - gi\|109107198\|ref\|XP_001092199.1\| PREDICTED: calcitonin-related polypeptide, beta [Macaca mulatta]	212.0	[0..1]	[127..1]
CALCB - calcitonin-related polypeptide beta	207.0	[0..1]	[127..1]
gi\|114636335 - gi\|114636335\|ref\|XP_529390.2\| PREDICTED: similar to Calcitonin gene-related peptide 2 precursor (Cal...	206.0	[0..1]	[127..12]
CALCA_RAT - Calcitonin gene-related peptide 1 OS=Rattus norvegicus GN=Calca PE=2 SV=1	199.0	[0..1]	[127..1]
CALCA_CHICK - Calcitonin gene-related peptide OS=Gallus gallus GN=CALCA PE=2 SV=2	198.0	[0..1]	[126..1]
gi\|116062123, gi... - gi\|157278525\|ref\|NP_001098364.1\| calcitonin gene-related peptide 2 [Oryzias latipes], gi\|116062123\|d...	197.0	[0..1]	[126..1]
gi\|19772948 - gi\|19772948\|emb\|CAC81277.1\| calcitonin gene related peptide [Takifugu rubripes]	195.0	[0..1]	[126..1]
CRSP3_PIG - Calcitonin receptor-stimulating peptide 3 OS=Sus scrofa GN=CRSP3 PE=2 SV=1	194.0	[0..1]	[127..1]
CRSP1_CANLF - Calcitonin receptor-stimulating peptide 1 OS=Canis lupus familiaris GN=CRSP1 PE=2 SV=1	190.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFWKFSPFL PLSILVLYQV GIIQAAPFRS ALESLPDPAV LPEEESRLLL AALVKDYVQM  60
   61 KVRALEQEQE TGGASITAQK RSCNTASCLT HRLAGLLSSA GSMANSNLLP TEMGFKVSGR 120
  121 RRRDLQA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.954
Match:	2cujA
Description:	Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits