YRC Public Data Repository - Protein Structure Prediction

Protein:	BCR_ECOLI
Organism:	Escherichia coli
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|70984531, gi\|... - gi\|70984531\|ref\|XP_747772.1\| MFS multidrug transporter [Aspergillus fumigatus Af293], gi\|66845399\|gb... gi\|159122556 - gi\|159122556\|gb\|EDP47677.1\| MFS multidrug transporter, putative [Aspergillus fumigatus A1163]	214.0	[0..2]	[394..159]
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	199.0	[0..1]	[395..293]
gi\|39944294, gi\|... - gi\|39944294\|ref\|XP_361684.1\| hypothetical protein MGG_04158 [Magnaporthe grisea 70-15], gb\|EAA50399....	196.0	[0..2]	[393..129]
gi\|49650092 - gi\|49650092\|emb\|CAG79818.1\| YALI0E21241p [Yarrowia lipolytica] gi\|49650092, gi\|... - gi\|50553624\|ref\|XP_504223.1\| YALI0E21241p [Yarrowia lipolytica], gi\|49650092\|emb\|CAG79818.1\| unnamed...	192.0	[0..2]	[395..131]
gi\|50260260, gi\|... - gi\|50260260\|gb\|EAL22919.1\| hypothetical protein CNBA6880 [Cryptococcus neoformans var. neoformans B-...	190.0	[0..3]	[391..104]
gi\|218202668 - gi\|218202668\|gb\|EEC85095.1\| hypothetical protein OsI_32467 [Oryza sativa Indica Group] PHT44_ORYSJ - Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1	185.0	[0..6]	[391..179]
gi\|20145256 - gi\|20145256\|emb\|CAD29613.1\| mfs-family multidrug resistance protein, putative [Aspergillus fumigatus...	183.0	[0..1]	[393..65]
gi\|78495751, gi\|... - gi\|78495751\|ref\|ZP_00847969.1\| Major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB1...	181.0	[0..4]	[396..445]
gi\|90305550, gi\|... - gi\|90305550\|gb\|EAS35181.1\| hypothetical protein CIMG_00535 [Coccidioides immitis RS], gi\|119192316\|r...	180.0	[0..1]	[393..64]
gi\|85092504 - gi\|85092504\|ref\|XP_959425.1\| hypothetical protein NCU06077 [Neurospora crassa OR74A] gi\|32410903, gi\|... - gi\|32410903\|ref\|XP_325932.1\| hypothetical protein [Neurospora crassa], gi\|28920843\|gb\|EAA30189.1\| co...	179.0	[0..2]	[393..149]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTRQHSSFA IVFILGLLAM LMPLSIDMYL PALPVISAQF GVPAGSTQMT LSTYILGFAL  60
   61 GQLIYGPMAD SFGRKPVVLG GTLVFAAAAV ACALANTIDQ LIVMRFFHGL AAAAASVVIN 120
  121 ALMRDIYPKE EFSRMMSFVM LVTTIAPLMA PIVGGWVLVW LSWHYIFWIL ALAAILASAM 180
  181 IFFLIKETLP PERRQPFHIR TTIGNFAALF RHKRVLSYML ASGFSFAGMF SFLSAGPFVY 240
  241 IEINHVAPEN FGYYFALNIV FLFVMTIFNS RFVRRIGALN MFRSGLWIQF IMAAWMVISA 300
  301 LLGLGFWSLV VGVAAFVGCV SMVSSNAMAV ILDEFPHMAG TASSLAGTFR FGIGAIVGAL 360
  361 LSLATFNSAW PMIWSIAFCA TSSILFCLYA SRPKKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2gfpA
Description:	No description for 2gfpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits