YRC Public Data Repository - Protein Structure Prediction

Protein:	APOC3_PIG
Organism:	Sus scrofa
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOC3_PIG.

Description	E-value	Query Range	Subject Range
gi\|12842337, gi\|... - gi\|15421856\|ref\|NP_075603.1\| apolipoprotein C-III [Mus musculus], gi\|12842337\|dbj\|BAB25563.1\| unname...	138.0	[0..1]	[96..1]
APOC3_MACFA - Apolipoprotein C-III OS=Macaca fascicularis GN=APOC3 PE=1 SV=2	136.0	[0..1]	[96..1]
gi\|109108764 - gi\|109108764\|ref\|XP_001090312.1\| PREDICTED: similar to Apolipoprotein C-III precursor (Apo-CIII) (Ap...	135.0	[0..1]	[96..1]
gi\|91990, gi\|149... - gi\|91990\|pir\|\|B24700 apolipoprotein C-III precursor - rat, gi\|149041554\|gb\|EDL95395.1\| apolipoprotei...	131.0	[0..1]	[95..1]
APOC3_CANLF - Apolipoprotein C-III OS=Canis lupus familiaris GN=APOC3 PE=2 SV=1	130.0	[0..1]	[96..1]
APOC3_BOVIN - Apolipoprotein C-III OS=Bos taurus GN=APOC3 PE=1 SV=2	127.0	[0..1]	[95..1]
gi\|123982458, gi... - gi\|123997125\|gb\|ABM86164.1\| apolipoprotein C-III [synthetic construct], gi\|123982458\|gb\|ABM82970.1\| ... APOC3 - apolipoprotein C-III	126.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPRVLLVAG LLVLLACAQA IEAEDTSLLD KMQDYVKQAT RTAQDALTSV KESEVAQQAR  60
   61 GWVTDSISSL KDYWSTFKGK FTDFWDYTPK PEPSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.552842
Match:	PF05778.3
Description:	No description for PF05778.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.905	N/A	N/A	a.7.16	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits