YRC Public Data Repository - Protein Structure Prediction

Protein:	AMTB_ECOLI
Organism:	Escherichia coli
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMTB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|87289302, gi\|... - gi\|87308220\|ref\|ZP_01090362.1\| ammonium/methylammonium permease [Blastopirellula marina DSM 3645], g...	403.0	[0..29]	[422..7]
gi\|110804479, gi... - gi\|110804479\|ref\|YP_687999.1\| ammonium transporter [Shigella flexneri 5 str. 8401], gi\|110614027\|gb\|... gi\|24111835, gi\|... - gi\|24111835\|ref\|NP_706345.1\| ammonium transporter [Shigella flexneri 2a str. 301], gi\|24050627\|gb\|AA... gi\|30040196, gi\|... - gi\|30061952\|ref\|NP_836123.1\| ammonium transporter [Shigella flexneri 2a str. 2457T], gi\|30040196\|gb\|...	397.0	[0..1]	[428..1]
gi\|110640712, gi... - gi\|110640712\|ref\|YP_668440.1\| ammonium transporter [Escherichia coli 536], gi\|110342304\|gb\|ABG68541....	396.0	[0..1]	[428..1]
gi\|91209525, gi\|... - gi\|91209525\|ref\|YP_539511.1\| ammonium transporter [Escherichia coli UTI89], gi\|91071099\|gb\|ABE05980.... gi\|218557361, gi... - gi\|218557361\|ref\|YP_002390274.1\| ammonium transporter [Escherichia coli S88], gi\|218364130\|emb\|CAR01... gi\|237707553, gi... - gi\|237707553\|ref\|ZP_04538034.1\| ammonium transporter [Escherichia sp. 3_2_53FAA], gi\|226898763\|gb\|EE... gi\|115511835, gi... - gi\|117622711\|ref\|YP_851624.1\| ammonium transporter [Escherichia coli APEC O1], gi\|115511835\|gb\|ABI99...	396.0	[0..1]	[428..1]
gi\|191173692, gi... - gi\|191173692\|ref\|ZP_03035216.1\| ammonium transporter [Escherichia coli F11], gi\|190906050\|gb\|EDV6566... gi\|26246465, gi\|... - gi\|26246465\|ref\|NP_752504.1\| ammonium transporter [Escherichia coli CFT073], gi\|26106863\|gb\|AAN79048... gi\|227838623, gi... - gi\|227884537\|ref\|ZP_04002342.1\| ammonium transporter [Escherichia coli 83972], gi\|227838623\|gb\|EEJ49...	396.0	[0..1]	[428..1]
gi\|82542940, gi\|... - gi\|82542940\|ref\|YP_406887.1\| ammonium transporter [Shigella boydii Sb227], gi\|81244351\|gb\|ABB65059.1... gi\|187732151, gi... - gi\|187732151\|ref\|YP_001879163.1\| ammonium transporter [Shigella boydii CDC 3083-94], gi\|187429143\|gb...	396.0	[0..1]	[428..1]
gi\|82775743, gi\|... - gi\|82775743\|ref\|YP_402090.1\| ammonium transporter [Shigella dysenteriae Sd197], gi\|81239891\|gb\|ABB60...	394.0	[0..1]	[428..1]
gi\|90416895\|ref\|... - ammonium transporter [marine gamma proteobacterium HTCC2207] gi\|90416895, gi\|... - gi\|90416895\|ref\|ZP_01224824.1\| ammonium transporter [marine gamma proteobacterium HTCC2207], gi\|9033...	392.0	[0..19]	[427..21]
gi\|205330998, gi... - gi\|205330998\|gb\|EDZ17762.1\| ammonium transporter nrgA [Salmonella enterica subsp. enterica serovar 4... gi\|205323476, gi... - gi\|205323476\|gb\|EDZ11315.1\| ammonium transporter nrgA [Salmonella enterica subsp. enterica serovar S... gi\|161364704, gi... - gi\|161615340\|ref\|YP_001589305.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar P... gi\|194447691, gi... - gi\|194447691\|ref\|YP_002044498.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar H... gi\|194446031, gi... - gi\|194446031\|ref\|YP_002039707.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar N... gi\|205350026, gi... - gi\|205350026\|gb\|EDZ36657.1\| ammonium transporter nrgA [Salmonella enterica subsp. enterica serovar H... gi\|205339933, gi... - gi\|205339933\|gb\|EDZ26697.1\| ammonium transporter nrgA [Salmonella enterica subsp. enterica serovar H... gi\|29138416, gi\|... - gi\|29142784\|ref\|NP_806126.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Typhi... gi\|16759444 - gi\|16759444\|ref\|NP_455061.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Typhi... lcl\|NC_016856.1_... - [gene=amtB] [protein=ammonium transporter] [protein_id=YP_005236161.1] [location=521588..522874] gi\|25324694, gi\|... - gi\|25324694\|pir\|\|AC0560 probable ammonium transporter amtB [imported] - Salmonella enterica subsp. e... gi\|16418971, gi\|... - gi\|16763844\|ref\|NP_459459.1\| ammonium transporter [Salmonella typhimurium LT2], gi\|16418971\|gb\|AAL19... gi\|213425476 - gi\|213425476\|ref\|ZP_03358226.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|213418931 - gi\|213418931\|ref\|ZP_03351997.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|200389628, gi... - gi\|200389628\|ref\|ZP_03216239.1\| ammonium transporter nrgA [Salmonella enterica subsp. enterica serov... gi\|197242501, gi... - gi\|197264246\|ref\|ZP_03164320.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Sa... gi\|214000476 - gi\|214000476\|ref\|ZP_03411211.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|213619059 - gi\|213619059\|ref\|ZP_03372885.1\| ammonium transporter [Salmonella enterica subsp. enterica serovar Ty...	390.0	[0..1]	[428..1]
gi\|71673746, gi\|... - gi\|71673746\|ref\|ZP_00671494.1\| PAS:Ammonium transporter [Trichodesmium erythraeum IMS101], gi\|716729...	390.0	[0..25]	[421..96]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIATIKTGL ASLAMLPGLV MAAPAVADKA DNAFMMICTA LVLFMTIPGI ALFYGGLIRG  60
   61 KNVLSMLTQV TVTFALVCIL WVVYGYSLAF GEGNNFFGNI NWLMLKNIEL TAVMGSIYQY 120
  121 IHVAFQGSFA CITVGLIVGA LAERIRFSAV LIFVVVWLTL SYIPIAHMVW GGGLLASHGA 180
  181 LDFAGGTVVH INAAIAGLVG AYLIGKRVGF GKEAFKPHNL PMVFTGTAIL YIGWFGFNAG 240
  241 SAGTANEIAA LAFVNTVVAT AAAILGWIFG EWALRGKPSL LGACSGAIAG LVGVTPACGY 300
  301 IGVGGALIIG VVAGLAGLWG VTMLKRLLRV DDPCDVFGVH GVCGIVGCIM TGIFAASSLG 360
  361 GVGFAEGVTM GHQLLVQLES IAITIVWSGV VAFIGYKLAD LTVGLRVPEE QEREGLDVNS 420
  421 HGENAYNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2ns1A
Description:	No description for 2ns1A was found.

Predicted functions:

Term	Confidence	Notes
ammonium transmembrane transporter activity	10.0624820335928	bayes_pls_golite062009
organic cation transmembrane transporter activity	9.07420898067257	bayes_pls_golite062009
cation transmembrane transporter activity	7.57181833547312	bayes_pls_golite062009
ion transmembrane transporter activity	7.46308808953548	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.08971867997216	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	7.03159982829686	bayes_pls_golite062009
transporter activity	5.3870893301235	bayes_pls_golite062009
transmembrane transporter activity	5.3046132351753	bayes_pls_golite062009
substrate-specific transporter activity	5.16067985999244	bayes_pls_golite062009
methylammonium transmembrane transporter activity	4.23822940190415	bayes_pls_golite062009
active transmembrane transporter activity	1.08017669832334	bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity	0.499461838170411	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: