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View Structure Prediction Details

Protein: CE36884
Organism: Caenorhabditis elegans
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36884.

Description E-value Query
Range
Subject
Range
gi|7505078, gi|1... - gi|7505078|pir||T23192 hypothetical protein K01G12.2 - Caenorhabditis elegans, ref|NP_502722.1| puta...
346.0 [0..215] [415..1]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILHSLILVS AVSLVSSLDT TKTMTSQLHE FQMNNSAGVM SALEMLPKEC SKNGKKYQPN  60
   61 EEFEIGNLRY KCQKYGVYTI EGCKRKDGTT MKLGESAVVD NVKHQCLGMG SSVFYKETTC 120
  121 GVMGMPECDK VPLPKGFEAA MKKHGEKNEV PGKTNVDGVD LPKGWSLVDG GKKPITGTNA 180
  181 SVVTHILMFN PTQLRAKRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFKGAGVGSV IGVEMMPADQ IGKPLSSKGN SAHSSSSMSP SSSSSPSSSK IIGTQTVGAS  60
   61 LQTIKSGDKH DTGLVDLNQR NDQKMSGSDK MKAGSVHGSK SNVDW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [305-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGRKMLNHHK AKFQFWLGLM IAQYKILSSK IEEYPETLDI RHHATMQHPL KEKNTTTLLD  60
   61 QIIRKSYHDH LVPTPNFPDH NRQVAPQDEP QIDVQEGAEV AGDDHNLNGE G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle