| Protein: | CE36653 |
| Organism: | Caenorhabditis elegans |
| Length: | 788 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36653.
| Description | E-value | Query Range |
Subject Range |
|
|
383.0 | [0..3] | [787..263] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MLRNLILITL LVASGHGQTP VIGGTCKLGT ADVQIGGKQT QFFLKCETTA DSAEGEGVWV 60
61 VKSRAAAAPS SVPSVPAENT QPQQHPKARK PASPNICEQD NGARESEVCA VSATCLQAHN 120
121 DFPSSYLQCD QTTLRWVRKS CQEN
|
| Detection Method: |  |
| Confidence: | 13.69897 |
| Match: | 1tozA |
| Description: | NMR structure of the human NOTCH-1 ligand binding region |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [145-337] |
1 11 21 31 41 51
| | | | | |
1 FLFNFEQQTC IVPKRMSSLS RQQASGLVCT FSSCSNSNPC SVGTCNNGYC CSSGSNSGSA 60
61 IIVGGGSSNC VGCQNAPQII TIPQNSCPGG GYSVGGCSSG YCATGYSCIQ NQCCPSYNSA 120
121 PRISVYTCPS GGNAVGACMS GRCASGYTCS NNVCCPQTTT TNPFVCPDGT QAAGGCVNGQ 180
181 CGTGYTCSNG LCC
|
| Detection Method: | |
| Confidence: | 1.37 |
| Match: | 1grzA |
| Description: | A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [338-725] |
1 11 21 31 41 51
| | | | | |
1 AGTSTTVKCL DGSDAVGACI PSCTGDGCGG VQVSYYCGSG YTCTTGNICC PINSCPNGGE 60
61 VLGPTINGLC PTGYTVQGNL CCSATCTDGS TGLPSVNGVC IDGYSLTNGV CCPASVTCTD 120
121 EISIGPCTGT GFNGGCPAGY ACDSNQVNCC PVVRYTDESC QVGPAIDGLC PPGYVVVYIP 180
181 NSPLITNGVN PGTCIDLQCT TGLCLTANQI GDCDTATDAG TCPTGYTCFT NAGICCSTTT 240
241 FSRLRIGNSR QMAQKPNYGR PLHSYMPPRF GGPSSSCSDG SLSSGPCMNG LCGIGLECQN 300
301 GKCCSPSSNK PAGLLQSKCP SGDTAVSGCF PNGSCGTGYE CVSSLNLCCP PGQPQTFPSF 360
361 PGNNNGFNIN NNNRFGSLSM SPRPIGAR
|
| Detection Method: | |
| Confidence: | 8.221849 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
|
Region A: Residues: [726-788] |
1 11 21 31 41 51
| | | | | |
1 CQLDGECVGQ AEGLSMCHAG VCQCSPIAYT QGIACVRRKS FQMNDDPVID AANDDKSSSS 60
61 VSV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
