| Protein: | exp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 539 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for exp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
412.0 | [0..1] | [539..1] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MSASILILAT CHQVLADFNS YVVPQPHAQR DHRQDISQHY DYLMEENDEP LGRGAAPSKY 60
61 RSSHGQAQHR PEMTESENFA QPNTESVF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [89-401] |
1 11 21 31 41 51
| | | | | |
1 SSGGVDSYGE TRDFLQFLRR IQYDHRQVPE NEKGEATYVE VSVVVSNIRA VSEVTMDYAL 60
61 ELFYRESWRD PRLQYDRKLF KNKTELALHE SYTNFLWFPD TFVPNAIASK NPQRNSISHR 120
121 SLLRLDETGK LLYSRRISLV CECTMDLTLF PFDKQLCKLG IESYGYTADH VVYKWSKGAR 180
181 TALELKKIRL PDFTIQEAYV TSQMESYATG NYSRLYVCFV FSRSSGFCFL QLIIPSTAVV 240
241 ITSWVSLWME TETEFQDMIS IILAITFLIF SYNEMMPRVS YIKAMDIYLG VCFMIVFLSL 300
301 IKLALVKYMR QKI
|
| Detection Method: | |
| Confidence: | 72.0 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [402-539] |
1 11 21 31 41 51
| | | | | |
1 MLTSDSGNSL REMSQMSTRQ RLRARKTSNM NFRNNGGGSI PINEEHQQML TVPNGEDKMA 60
61 NGDDKEANNN GKSHLSDMLE IRITQRTMHR FHWISQMLFF FGFVIFCLFY FLIYPNLHIV 120
121 SVDPACDKNL AEWFADIY
|
| Detection Method: | |
| Confidence: | 29.09691 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
