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View Structure Prediction Details

Protein: CE37249
Organism: Caenorhabditis elegans
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37249.

Description E-value Query
Range
Subject
Range
gi|73912808 - gi|73912808|gb|AAZ91346.1| Hypothetical protein H18N23.2c [Caenorhabditis elegans]
427.0 [0..9] [356..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWKINFTAP MEMGRERECC VLSTSPGCRR AASFPFVGDS SIIQASSLKV RSKSESEALN  60
   61 KMRLTQMNLE TVRKRLSEST IKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPDEGSDYQ SHSSSSSECE VDDLELFCAG PLELKEEEKL RKSVRFADDC GHELYMVRVA  60
   61 TEPSNCPPKL SPSVLRRYRG E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [165-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFEEEEMTTR EPAPVWNLMF KQPAADYVRF RENMETNKVS LENVILNNEA YKVMGTIKVG  60
   61 NIAFEKSVFV RYTMNGWISY MDKAAIYQPS TSKIQDTFKF DLDLPSSVEK IHQIEFCICF 120
  121 KANGTEYWDS NSGTNYVLHC EQQQHPAVPQ QRRASLFGSS KYLDRDDAYK LDYNDWGKFA 180
  181 SWKALSTDGP YW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.221849
Match: 2eefA
Description: No description for 2eefA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle