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View Structure Prediction Details

Protein: CE37249
Organism: Caenorhabditis elegans
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37249.

Description E-value Query
Range
Subject
Range
gi|73912808 - gi|73912808|gb|AAZ91346.1| Hypothetical protein H18N23.2c [Caenorhabditis elegans]
427.0 [0..9] [356..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWKINFTAP MEMGRERECC VLSTSPGCRR AASFPFVGDS SIIQASSLKV RSKSESEALN  60
   61 KMRLTQMNLE TVRKRLSEST IKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPDEGSDYQ SHSSSSSECE VDDLELFCAG PLELKEEEKL RKSVRFADDC GHELYMVRVA  60
   61 TEPSNCPPKL SPSVLRRYRG E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [165-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFEEEEMTTR EPAPVWNLMF KQPAADYVRF RENMETNKVS LENVILNNEA YKVMGTIKVG  60
   61 NIAFEKSVFV RYTMNGWISY MDKAAIYQPS TSKIQDTFKF DLDLPSSVEK IHQIEFCICF 120
  121 KANGTEYWDS NSGTNYVLHC EQQQHPAVPQ QRRASLFGSS KYLDRDDAYK LDYNDWGKFA 180
  181 SWKALSTDGP YW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.221849
Match: 2eefA
Description: No description for 2eefA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle