YRC Public Data Repository - Protein Structure Prediction

Protein:	CE36491
Organism:	Caenorhabditis elegans
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36491.

Description	E-value	Query Range	Subject Range
gi\|157751414 - gi\|157751414\|ref\|XP_001679419.1\| Hypothetical protein CBG02856 [Caenorhabditis briggsae AF16] gi\|39597244, gi\|... - gi\|39597244\|emb\|CAE59472.1\| Hypothetical protein CBG02856 [Caenorhabditis briggsae], gi\|187037077\|em...	738.0	[0..1]	[386..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEIAIDPSI NQDMSASEIY RFEGTLYTLP FVTKNNDISW NKSRDEYKSE CRTFPPLYKS  60
   61 LFDRQKCGKV RFSPPLSLEQ NVNAHLKGSS SQHMTTILQG VEDAGYVFPD IDMLVTTEVL 120
  121 NTIAGSIFNQ EKSWKLRAYV TQVQGKNMVI VCDDDFEHHQ RISSTQSDFP IERTEALNFA 180
  181 HSICVRDGTR ELNNSLHGSE VVVSTIKFRE KSVKMIVIGE VDLVTGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNKSLNTIVA TGRTARASFG HNVESRVDSL DYLWSRCFWL GQRLCLVGMR STEEAPVSSA  60
   61 YLYSLYPPTL KERKRTNYRV DVATTCVAQV MIRLREEAAK MPHANWIIEY TGRDKEFDPA 120
  121 FIKINVAPDT HSFLLVQEYW HIEKEAFESA EEQKKAEDQN VVEPEKIVRT FHQMKRLPGV 180
  181 RKSGTIAKQF QKIINSMSS