YRC Public Data Repository - Protein Structure Prediction

Protein:	CE36491
Organism:	Caenorhabditis elegans
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE36491.

Description	E-value	Query Range	Subject Range
gi\|157751414 - gi\|157751414\|ref\|XP_001679419.1\| Hypothetical protein CBG02856 [Caenorhabditis briggsae AF16] gi\|39597244, gi\|... - gi\|39597244\|emb\|CAE59472.1\| Hypothetical protein CBG02856 [Caenorhabditis briggsae], gi\|187037077\|em...	738.0	[0..1]	[386..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEIAIDPSI NQDMSASEIY RFEGTLYTLP FVTKNNDISW NKSRDEYKSE CRTFPPLYKS  60
   61 LFDRQKCGKV RFSPPLSLEQ NVNAHLKGSS SQHMTTILQG VEDAGYVFPD IDMLVTTEVL 120
  121 NTIAGSIFNQ EKSWKLRAYV TQVQGKNMVI VCDDDFEHHQ RISSTQSDFP IERTEALNFA 180
  181 HSICVRDGTR ELNNSLHGSE VVVSTIKFRE KSVKMIVIGE VDLVTGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNKSLNTIVA TGRTARASFG HNVESRVDSL DYLWSRCFWL GQRLCLVGMR STEEAPVSSA  60
   61 YLYSLYPPTL KERKRTNYRV DVATTCVAQV MIRLREEAAK MPHANWIIEY TGRDKEFDPA 120
  121 FIKINVAPDT HSFLLVQEYW HIEKEAFESA EEQKKAEDQN VVEPEKIVRT FHQMKRLPGV 180
  181 RKSGTIAKQF QKIINSMSS