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View Structure Prediction Details

Protein: CE37224
Organism: Caenorhabditis elegans
Length: 522 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37224.

Description E-value Query
Range
Subject
Range
gi|49527412 - gi|49527412|emb|CAG61052.1| unnamed protein product [Candida glabrata]
gi|50291337, gi|... - gi|50291337|ref|XP_448101.1| unnamed protein product [Candida glabrata], gi|49527412|emb|CAG61052.1|...
308.0 [0..46] [520..108]

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Predicted Domain #1
Region A:
Residues: [1-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLNINRFH ILCFFLWQFG LFYACQLIFP IFYNFHPGLS CEDPGFNFSK PKCKLSKVEI  60
   61 CTELTANCSK WHIEPAPFHS MVQDFKMFCG TKAYDSAWIA TIQFIGALVG ALVYGHLGDH 120
  121 FGRKPVSFVG ISIGIIFGVA SGFAPSWEVF AVLLFICGTS VACIMIVFYA YILEFIEPEQ 180
  181 RVFLRTFFNW VRYNKPDLGV IMGFQGYARL VFTLVCFICG YWRSAAIATS LLALPILPVL 240
  241 LWLPESPKWY ATKNRFQEMK EAEKKISWLS GISYVEREDR RTEKIEEKDT KVYTIRDLFS 300
  301 SWPIAYSTIV VGSLWFSTSV SSFGADLNSG NLAGNFYLSQ FVQAAAIALS KLSIFLLDLF 360
  361 IPSFNRQRLH QVPQIIMIAC YTTIMALMIS PDSDCSSQGS RNLAIIIINI IGTSFIELTW 420
  421 DACYLVAAEI FPTRIRTIGI GTCSLLARIG ALLAPQMAYL SEIYPPIPYI IVCSIGIISL 480
  481 LISCFFLPDT KGVDLGALDR NPLEESGDNK EEEISEIQIG TN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.09691
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
substrate-specific transmembrane transporter activity 3.58726613324261 bayes_pls_golite062009
anion transmembrane transporter activity 2.65263965947211 bayes_pls_golite062009
ion transmembrane transporter activity 2.55901085670553 bayes_pls_golite062009
transporter activity 2.54286095434601 bayes_pls_golite062009
transmembrane transporter activity 2.01247278444729 bayes_pls_golite062009
cation transmembrane transporter activity 1.81166847322847 bayes_pls_golite062009
substrate-specific transporter activity 1.77039368764865 bayes_pls_golite062009
organic anion transmembrane transporter activity 1.68974999576484 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 1.41043476793843 bayes_pls_golite062009
phosphate transmembrane transporter activity 0.55225137730774 bayes_pls_golite062009
active transmembrane transporter activity 0.33203350453105 bayes_pls_golite062009
polyol transmembrane transporter activity 0.24475883286552 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.24475883286552 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.2309068592963 bayes_pls_golite062009
binding 0.105551689569449 bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity 1.26964387230144E-4 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle