| Protein: | pdfr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 541 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdfr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
287.0 | [0..2] | [541..184] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MADATSPFNV SILDNSTKLS EMVESGWNVL ASTSVQAFNE AMDVLEESYP LCKKMLDHNN 60
61 LFPERDPNDT RIWCNATYDT VLCWPPTPAN
|
| Detection Method: |  |
| Confidence: | 19.30103 |
| Match: | 1ijyA |
| Description: | Frizzled 8 (FZ8) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transmembrane receptor activity | 4.38708793497137 | bayes_pls_golite062009 |
| receptor activity | 4.1046853496316 | bayes_pls_golite062009 |
| signal transducer activity | 3.17034085692897 | bayes_pls_golite062009 |
| molecular transducer activity | 3.17034085692897 | bayes_pls_golite062009 |
| Wnt receptor activity | 2.95244120669902 | bayes_pls_golite062009 |
| binding | 2.18217693324765 | bayes_pls_golite062009 |
| protein binding | 2.15165760199286 | bayes_pls_golite062009 |
| Wnt-protein binding | 2.04664201899031 | bayes_pls_golite062009 |
|
Region A: Residues: [91-139] |
1 11 21 31 41 51
| | | | | |
1 SSVTLQCPHM KGLDPNKNIT KDCHVSGVWS GRNAGEMGPT LPGWTNFTM
|
| Detection Method: | |
| Confidence: | 1.84 |
| Match: | 1u34A |
| Description: | 3D NMR structure of the first extracellular domain of CRFR-2beta, a type B1 G-protein coupled receptor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [140-541] |
1 11 21 31 41 51
| | | | | |
1 CYTDEVIYIM QNLNNESLTI AQEVARNARK LEFVGLGLSL VSLILAISIF SYFRRLRVFR 60
61 NLLHLHLMIA MLMVVILRLV LYIDLIFTGE NGPHTNSAEG KTINTMPIVC EGMFFFLEYF 120
121 KTVTFCWMFL EGIYLNNQIV FGFFNSEPKL LPYFIAGYGI PLVHTMLWLL VVLIKKDFKV 180
181 ERCLGSYYLE PEFWILDGPR MAELVINLFF ICNVIRVLYS KVRESNNTSE AGLKKSVKAA 240
241 MMLLPLLGVP NIMQTIPFAP TRDNIMVFAV WTYTASFTYM YQGLMVASIY CFTNKEVNHV 300
301 LKTFYARYRL LHKSQNELRR GSRSVASHYA AKNGTANASA PQTNNADEFG KLSPFPSRSK 360
361 KGSDDSTTKL MKDAVMEEEK NANNNGYGSA GEMTPLREGY EE
|
| Detection Method: | |
| Confidence: | 51.522879 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
