| Protein: | crm-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 671 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crm-1.
| Description | E-value | Query Range |
Subject Range |
|
|
286.0 | [0..11] | [670..191] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MQLVVCVFLL LFSFVNFLRT EQSERMHDDC LKAICPLVFH KGCPSDSQLI TVSPAPGNCC 60
61 PPPGSCHCDQ KKCVPSVPTC TKEERLVMVE KGSDIPGKCC AYYECH
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [107-232] |
1 11 21 31 41 51
| | | | | |
1 KKEKKCENVH CPPMFQDEEE CPPDSIRPPE SISKESCCPI RQSCKCRGSI CRPAQCPDGK 60
61 VVNVTKKGTG FPGRCCDKWE CVDAELSKAK CNHSGIERQP LETWHVSDCE SCQCIRGVSV 120
121 CNKMTC
|
| Detection Method: | |
| Confidence: | 8.221849 |
| Match: | 1tozA |
| Description: | NMR structure of the human NOTCH-1 ligand binding region |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [233-568] |
1 11 21 31 41 51
| | | | | |
1 PKVNQECTWI GIPTGECCPV CLGCQTDNQT KLERGATWQK DDCTSCTCSE LGAHMCEKYM 60
61 CKTDCENPRK VEGQCCPVCD EPTIIRPPAT CPSLELCSLR CANGLRRDNI GCYVCECLPD 120
121 EVPTNPRCRE LNDENCEKQC AHGYLKDEDG CTVCKCSKCP PLHQCHKHCL YGFETNSAGC 180
181 SLCKCRASSK LDKKQGTTKS TKLGAGSAQQ TEYHSEKCIS FSNDGHQIVR DGGEWWSDGC 240
241 RHCFCENKQE FCSLISCPTK PSDCADEKWV QKEDECCPSC IDQKKKPKSS NSLAAQKHEH 300
301 TVCQSPGTGR LFTDGETWQL APCVSCTCRV GHVLCR
|
| Detection Method: | |
| Confidence: | 7.69897 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
|
Region A: Residues: [569-671] |
1 11 21 31 41 51
| | | | | |
1 TTECPPIACP NPEYQNEEDC CPTCPEQKVE NTKNEKGDTI VCTDDAGTAH IVAAQVQRSR 60
61 PNSIGGSINS KTFSVKNNWI HAKTRGLEGH ERRKYGGIVE DIN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
