YRC Public Data Repository - Protein Structure Prediction

Protein:	CPT1
Organism:	Saccharomyces cerevisiae
Length:	393 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPT1.

Description	E-value	Query Range	Subject Range
gi\|854507, gi\|171318 - gi\|854507\|emb\|CAA86895.1\| sn-1,2-diacylglycerol cholinephosphotransferase [Saccharomyces cerevisiae]...	3.0E-95	[1..393]	[15..407]
AAPT1_ARATH - Choline/ethanolaminephosphotransferase 1 OS=Arabidopsis thaliana GN=AAPT1 PE=1 SV=1	2.0E-90	[1..391]	[1..388]
gi\|30313359 - gi\|30313359\|gb\|AAL46934.3\|AF446089_1 aminoalcoholphosphotransferase [Brassica rapa subsp. pekinensis...	1.0E-88	[1..392]	[1..389]
gi\|45201440, gi\|... - gi\|45201440\|ref\|NP_987010.1\| AGR344Wp [Ashbya gossypii ATCC 10895], gi\|44986374\|gb\|AAS54834.1\| AGR34... gi\|44986374 - gi\|44986374\|gb\|AAS54834.1\| AGR344Wp [Ashbya gossypii ATCC 10895]	3.0E-87	[1..391]	[1..388]
gi\|3927806 - gi\|3927806\|gb\|AAC79507.1\| aminoalcoholphosphotransferase [Pimpinella brachycarpa]	2.0E-86	[1..391]	[1..388]
CCDS830.1_1 - null CEPT1 - choline/ethanolamine phosphotransferase 1 gi\|114558962, gi... - gi\|114558966\|ref\|XP_001161701.1\| PREDICTED: choline/ethanolaminephosphotransferase isoform 7 [Pan tr...	2.0E-85	[4..388]	[42..407]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFIPQSSL GNLKLYKYQS DDRSFLSNHV LRPFWRKFAT IFPLWMAPNL VTLLGFCFII  60
   61 FNVLTTLYYD PYFDQES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRWTYFSYAI GLFLYQTFDA CDGMHARRTG QQGPLGELFD HCIDSINTTL SMIPVCSMTG  60
   61 MGYTYMTIFS QFAILCSFYL STWEEYHTHK LYLAEFCGPV EGIIVLCISF IAVGIYGPQT 120
  121 IWHTKVAQFS WQDFVFDVET VHLMYAFCTG ALIFNIVTAH TNVVRYYESQ STKS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.721246
Match:	PF01066.9
Description:	No description for PF01066.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [252-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPSKTAENI SKAVNGLLPF FAYFSSIFTL VLIQPSFISL ALILSIGFSV AFVVGRMIIA  60
   61 HLTMQPFPMV NFPFLIPTIQ LVLYAFMVYV LDYQKGSIVS ALVWMGLGLT LAIHGMFIND 120
  121 IIYDITTFLD IYALSIKHPK EI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.931	N/A	N/A	f.1.3	delta-Endotoxin (insectocide), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits