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View Structure Prediction Details

Protein: PCC1
Organism: Saccharomyces cerevisiae
Length: 88 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCC1.

Description E-value Query
Range
Subject
Range
gi|109132848 - gi|109132848|ref|XP_001089237.1| PREDICTED: similar to ESO3 protein [Macaca mulatta]
133.0 [0..4] [85..126]
gi|157821989, gi... - gi|34881763|ref|XP_215227.2| PREDICTED: similar to Eso3 protein [Rattus norvegicus], gi|157821989|re...
128.0 [0..3] [85..58]
LAGE3_MOUSE - EKC/KEOPS complex subunit Lage3 OS=Mus musculus GN=Lage3 PE=2 SV=1
126.0 [0..3] [85..58]
LAGE3 - L antigen family, member 3
gi|190690245, gi... - gi|190691619|gb|ACE87584.1| L antigen family, member 3 protein [synthetic construct], gi|190690245|g...
123.0 [0..4] [85..54]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKREKSLD HTLELKIPFE TERQATIATK VLSPDPILKP QDFQVDYSSE KNVMLVQFRS  60
   61 IDDRVLRVGV SSIIDSIKTI VEAMDVLS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.769551
Match: PF09341.1
Description: No description for PF09341.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.979 N/A N/A d.58.51 Description not found.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle