YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR134C
Organism:	Saccharomyces cerevisiae
Length:	136 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR134C.

Description	E-value	Query Range	Subject Range
gi\|90103014 - gi\|90103014\|sp\|Q7LHD1.2\|YD134_YEAST RecName: Full=Uncharacterized cell wall protein YDR134C; Flags: ... CCW22_YEAST - Putative covalently bound cell wall protein 22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...	104.0	[0..1]	[118..1]
gi\|44985927 - gi\|44985927\|gb\|AAS54538.1\| AGR049Wp [Ashbya gossypii ATCC 10895] gi\|45201144, gi\|... - gi\|45201144\|ref\|NP_986714.1\| AGR049Wp [Ashbya gossypii ATCC 10895], gi\|44985927\|gb\|AAS54538.1\| AGR04...	75.0	[0..1]	[103..1]
gi\|49645116, gi\|... - gi\|50311897\|ref\|XP_455980.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645116\|emb\|CAG9868... gi\|49645116 - gi\|49645116\|emb\|CAG98688.1\| KLLA0F20031p [Kluyveromyces lactis]	61.0	[0..1]	[92..1]
gi\|49529165 - gi\|49529165\|emb\|CAG62831.1\| unnamed protein product [Candida glabrata] gi\|49529165, gi\|... - gi\|50294880\|ref\|XP_449851.1\| hypothetical protein CAGL0M11726g [Candida glabrata CBS138], gi\|4952916...	60.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSTVASIA AIAAVASAAS NITTATVTEE STTLVTITSC EDHVCSETVS PALVSTATVT  60
   61 VNDVIT*YTT WCPLPTTEAP KNTTSPAPTE KPTEKPTEKP TQQGSSTQTV TSYTGAAVKA 120
  121 LPAAGALLAG AAALL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits