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View Structure Prediction Details

Protein: EF1G2_ARATH
Organism: Arabidopsis thaliana
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF1G2_ARATH.

Description E-value Query
Range
Subject
Range
gi|109105896 - gi|109105896|ref|XP_001118440.1| PREDICTED: eukaryotic translation elongation factor 1 gamma [Macaca...
470.0 [0..4] [413..191]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVMHTYKG NKGANKALIA AEYAGVKIEE SADFQMGVTN KSPEFLKMNP IGKVPVLETP  60
   61 EGPIFESNAI ARYVSRKNGD NSLNGSSLIE YAHIEQWIDF SSLEIDANML KWFAPRMGYA 120
  121 PFSAPAEEAA ISALKRGLEA LNTHLASNTF LVGHSVTLAD IVTICNLNLG FATVMTKKFT 180
  181 SAFPHVERYF WTMVNQPEFK KVLGDAKQTE AVPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.522879
Match: 1aw9A
Description: STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.30799114442278 bayes_pls_golite062009
nucleic acid binding 2.06381591939564 bayes_pls_golite062009
DNA binding 1.92118545500784 bayes_pls_golite062009
binding 1.25802922431343 bayes_pls_golite062009
transcription activator activity 1.23146660729357 bayes_pls_golite062009
protein binding 1.18479617596618 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009
RNA binding 0.382017633056715 bayes_pls_golite062009
0.359224524631956 bayes_pls_golite062009
receptor binding 0.0497559408754589 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [215-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPTKKAPQPA KPKEEPKKAA PVAEAPKPAE EEEAPKPKAK NPLDLLPPSP MVLDDWKRLY  60
   61 SNTKSNFREV AIKGFWDMYD PEGYSLWFCD YKYNDENMVS FVTLNKVGGF LQRMDLARKY 120
  121 SFGKMLICGS EGPFKVKGLW LFRGPEIPKF IMDEVYDMEL YEWTKVDISD EAQKERVSQM 180
  181 IEDAEPFEGE ALLDAKCFK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.522879
Match: 1pbuA
Description: Elongation factor 1-gamma C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation elongation factor activity 11.9602302019768 bayes_pls_golite062009
translation factor activity, nucleic acid binding 7.4644014407268 bayes_pls_golite062009
translation regulator activity 7.42485540728491 bayes_pls_golite062009
nucleic acid binding 3.9329721501879 bayes_pls_golite062009
binding 3.0325775548747 bayes_pls_golite062009
protein binding 1.65598815428763 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle