YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AB8I_ARATH
Organism: Arabidopsis thaliana
Length: 557 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AB8I_ARATH.

Description E-value Query
Range
Subject
Range
gi|60752251 - gi|60752251|gb|AAX36074.1| non-intrinsic ABC protein [Nicotiana benthamiana]
710.0 [0..1] [557..1]

Back

Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR  60
   61 PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI DSFTIPKGLS EETIRLISKL 120
  121 KEEPDW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEFRFKAYA KFLKLEEPKW SDNRYPSINF QDMCYYSAPK KKPTLNSLDE VDPQLLEYFD  60
   61 KLGVPLTEQK RLANVAVDAV IDSVSIATTH RKTLEKSGVI FCSISEAIRE YPDLIKKYLG 120
  121 RVVPSDDNYY AALNSAVFSD GSFCYIPKNT RCPMPISTYF RINAMETGQF ERTLIVAEEG 180
  181 SFVEYLEGCT APSYDTNQLH AAVVELYCGK GAEIKYSTVQ NWYAGDEQGK GGIYNFVTKR 240
  241 GLCAGDRSKI SWTQVETGSA ITWKYPSVVL EGDDSVGEFY SVALTNNYQQ ADTGTKMIHK 300
  301 GKNTKSRIIS KGISAGHSRN CYRGLVQVQS KAEGAKNTST CDSMLIGDKA AANTYPYIQV 360
  361 KNPSAKVEHE ASTSKIGEDQ LFYFQQRGID HERALAAMIS GFCRDVFNKL PDEFGAEVNQ 420
  421 LMSIKLEGSV G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.154902
Match: 1vh4A
Description: Crystal structure of a stabilizer of iron transporter
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.334765053110546 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle