YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7487436, gi\|1...
Organism:	Arabidopsis thaliana
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7487436, gi|1....

Description	E-value	Query Range	Subject Range
gi\|26450279, gi\|... - gi\|4263701\|gb\|AAD15387.1\| hypothetical protein [Arabidopsis thaliana], gi\|28827704\|gb\|AAO50696.1\| un...	154.0	[0..1]	[139..1]
gi\|71734044, gi\|... - gi\|71734044\|ref\|YP_272519.1\| transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A]...	141.0	[0..21]	[138..5]
gi\|63254203, gi\|... - gi\|66043496\|ref\|YP_233337.1\| hypothetical protein Psyr_0226 [Pseudomonas syringae pv. syringae B728a...	140.0	[0..21]	[138..5]
gi\|152986350, gi... - gi\|94417800\|ref\|ZP_01297617.1\| hypothetical protein PaerP_01000582 [Pseudomonas aeruginosa PA7], gi\|...	136.0	[0..22]	[133..6]
gi\|11350416 - pir\|\|D82981 hypothetical protein PA5314 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|194548977, gi... - gi\|84317989\|ref\|ZP_00966423.1\| COG3450: Predicted enzyme of the cupin superfamily [Pseudomonas aerug... gi\|107104417 - gi\|107104417\|ref\|ZP_01368335.1\| hypothetical protein PaerPA_01005493 [Pseudomonas aeruginosa PACS2] gi\|32044695, gi\|... - gi\|32044695\|ref\|ZP_00141796.1\| COG3450: Predicted enzyme of the cupin superfamily [Pseudomonas aerug... gi\|84323979, gi\|... - gi\|84323979\|ref\|ZP_00972044.1\| COG3450: Predicted enzyme of the cupin superfamily [Pseudomonas aerug... gi\|9951631, gi\|1... - gi\|9951631\|gb\|AAG08699.1\|AE004944_3 hypothetical protein PA5314 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|218774646, gi... - gi\|218894417\|ref\|YP_002443287.1\| hypothetical protein PLES_57091 [Pseudomonas aeruginosa LESB58], gi...	135.0	[0..22]	[133..6]
gi\|49074010 - gi\|49074010\|gb\|AAT49373.1\| PA5314 [synthetic construct]	135.0	[0..22]	[133..6]
gi\|78060790, gi\|... - gi\|78060790\|ref\|YP_367365.1\| hypothetical protein Bcep18194_C7677 [Burkholderia sp. 383], gi\|7796534...	134.0	[0..20]	[132..2]
gi\|44662936 - gi\|44662936\|gb\|AAS47554.1\| hypothetical protein [symbiont bacterium of Paederus fuscipes]	134.0	[0..22]	[133..6]
gi\|28850565, gi\|... - gi\|28867331\|ref\|NP_789950.1\| hypothetical protein PSPTO_0091 [Pseudomonas syringae pv. tomato str. D... gi\|213924515, gi... - gi\|213970681\|ref\|ZP_03398806.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],... tr\|Q88BC6\|Q88BC6... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0091 PE=4 SV=1	134.0	[0..21]	[133..5]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLIMTTPF PGSVTACKKT NNLSVQRAFK VTCMQTEKPL EELYNVKVER KVSQKRLEEL  60
   61 GV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRWSVWKTGK CKLPWDWQVD QLVYIEQGEV RVVPEGSKRY MQFLAGDLVR YPKWLEADLF  60
   61 FNAPYIERYC FKAYGDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.154902
Match:	1o5uA
Description:	Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from Thermotoga maritima at 1.83 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits