YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7487436, gi\|1...
Organism:	Arabidopsis thaliana
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7487436, gi|1....

Description	E-value	Query Range	Subject Range
gi\|26450279, gi\|... - gi\|4263701\|gb\|AAD15387.1\| hypothetical protein [Arabidopsis thaliana], gi\|28827704\|gb\|AAO50696.1\| un...	154.0	[0..1]	[139..1]
gi\|71734044, gi\|... - gi\|71734044\|ref\|YP_272519.1\| transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A]...	141.0	[0..21]	[138..5]
gi\|63254203, gi\|... - gi\|66043496\|ref\|YP_233337.1\| hypothetical protein Psyr_0226 [Pseudomonas syringae pv. syringae B728a...	140.0	[0..21]	[138..5]
gi\|152986350, gi... - gi\|94417800\|ref\|ZP_01297617.1\| hypothetical protein PaerP_01000582 [Pseudomonas aeruginosa PA7], gi\|...	136.0	[0..22]	[133..6]
gi\|11350416 - pir\|\|D82981 hypothetical protein PA5314 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|194548977, gi... - gi\|84317989\|ref\|ZP_00966423.1\| COG3450: Predicted enzyme of the cupin superfamily [Pseudomonas aerug... gi\|107104417 - gi\|107104417\|ref\|ZP_01368335.1\| hypothetical protein PaerPA_01005493 [Pseudomonas aeruginosa PACS2] gi\|32044695, gi\|... - gi\|32044695\|ref\|ZP_00141796.1\| COG3450: Predicted enzyme of the cupin superfamily [Pseudomonas aerug... gi\|84323979, gi\|... - gi\|84323979\|ref\|ZP_00972044.1\| COG3450: Predicted enzyme of the cupin superfamily [Pseudomonas aerug... gi\|9951631, gi\|1... - gi\|9951631\|gb\|AAG08699.1\|AE004944_3 hypothetical protein PA5314 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|218774646, gi... - gi\|218894417\|ref\|YP_002443287.1\| hypothetical protein PLES_57091 [Pseudomonas aeruginosa LESB58], gi...	135.0	[0..22]	[133..6]
gi\|49074010 - gi\|49074010\|gb\|AAT49373.1\| PA5314 [synthetic construct]	135.0	[0..22]	[133..6]
gi\|78060790, gi\|... - gi\|78060790\|ref\|YP_367365.1\| hypothetical protein Bcep18194_C7677 [Burkholderia sp. 383], gi\|7796534...	134.0	[0..20]	[132..2]
gi\|44662936 - gi\|44662936\|gb\|AAS47554.1\| hypothetical protein [symbiont bacterium of Paederus fuscipes]	134.0	[0..22]	[133..6]
gi\|28850565, gi\|... - gi\|28867331\|ref\|NP_789950.1\| hypothetical protein PSPTO_0091 [Pseudomonas syringae pv. tomato str. D... gi\|213924515, gi... - gi\|213970681\|ref\|ZP_03398806.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],... tr\|Q88BC6\|Q88BC6... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0091 PE=4 SV=1	134.0	[0..21]	[133..5]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLIMTTPF PGSVTACKKT NNLSVQRAFK VTCMQTEKPL EELYNVKVER KVSQKRLEEL  60
   61 GV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.629	N/A	N/A	a.7.17	Description not found.
View	Download	0.539	N/A	N/A	a.189.1	Description not found.
View	Download	0.513	N/A	N/A	a.189.1	Description not found.
View	Download	0.513	N/A	N/A	a.64.2	Bacteriocin AS-48
View	Download	0.467	N/A	N/A	a.65.1	Annexin
View	Download	0.467	N/A	N/A	a.65.1	Annexin
View	Download	0.401	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.398	N/A	N/A	d.10.1	DNA-binding domain
View	Download	0.379	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.377	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.366	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.251	N/A	N/A	d.253.1	Description not found.
View	Download	0.224	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.211	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.207	N/A	N/A	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [63-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRWSVWKTGK CKLPWDWQVD QLVYIEQGEV RVVPEGSKRY MQFLAGDLVR YPKWLEADLF  60
   61 FNAPYIERYC FKAYGDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.154902
Match:	1o5uA
Description:	Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from Thermotoga maritima at 1.83 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits