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View Structure Prediction Details

Protein: BB_ARATH
Organism: Arabidopsis thaliana
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BB_ARATH.

Description E-value Query
Range
Subject
Range
gi|125549990 - gi|125549990|gb|EAY95812.1| hypothetical protein OsI_17683 [Oryza sativa Indica Group]
HIP1_ORYSJ - Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
113.0 [0..19] [243..445]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA  60
   61 YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN VADDPENTVA RSVQIGDTDE 120
  121 HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESRGLSQEL IETLPTKKYK FGSIFSRKRA GERCVICQLK YKIGERQMNL PCKHVYHSEC  60
   61 ISKWLSINKV CPVCNSEVFG EPSIH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.522879
Match: 1u6gB
Description: Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle