| Protein: | OCT1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 539 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OCT1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
294.0 | [0..82] | [536..40] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MEPSKQEVPK LMETPPNISN DSSATEKGEA TRQQQLPNNR YALTVDEVIE QHIGALGFAQ 60
61 ILHALLVSIA WIFDAQTTLI SIFSDAQPAA RL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [93-539] |
1 11 21 31 41 51
| | | | | |
1 LATGAIVEGA SLCGLASGEW EWIGPKSDTV VSEWNLICQH KFLVAVPSTL FFIGSLFGSG 60
61 VYGYLADSWF GRKKTLLLSC VLTFVTAFAI SFSPNVWVYA FLRFANGFFR SGIGSCCIVL 120
121 ATEIVGKKWR GQVGQYGFFF FTLGFLSLPL MAYLERKSWR NLYRIISFLP LGYAVCLLPF 180
181 AYESPRWLLV KGRNKEAMVV LKKLARLNGK QLPADLSLVD PIPERDDQTS SSEKFWKTKW 240
241 AVKRIIMVMM AGFGSGFVYY GIQLNAENLN FNLYLTVAVN ALMEFPAVFI GSFLLGVMNR 300
301 RPLFSNSSYL AGFACLLCAV LSIHRVIRAI SVAKWLQLAV EAVGFMASST AYDVLYVYCV 360
361 ELFPTNVRNT AVSLLRQAFM LGASAAPLLV ALGRESAMMS FIVFGVASVL SGIVSLWLRE 420
421 TRNAPLYETL AQQGKAEEIE NETIMIT
|
| Detection Method: | |
| Confidence: | 32.221849 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| substrate-specific transmembrane transporter activity | 5.46247398538901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.58978526526921 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 4.31967711223954 | bayes_pls_golite062009 |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| anion transmembrane transporter activity | 3.94605227012838 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| organic anion transmembrane transporter activity | 3.3413526350788 | bayes_pls_golite062009 |
| inorganic anion transmembrane transporter activity | 2.52916479889426 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.15783210522667 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| binding | 0.805286077372817 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| phosphate transmembrane transporter activity | 0.312628600969375 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
