YRC Public Data Repository - Protein Structure Prediction

Protein:	SNF12_ARATH
Organism:	Arabidopsis thaliana
Length:	534 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF12_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50418293 - gi\|50418293\|gb\|AAH77955.1\| Smarcd1 protein [Xenopus laevis]	598.0	[0..22]	[528..1]
gi\|89267384 - gi\|89267384\|emb\|CAJ82676.1\| SWI/SNF related, matrix associated, actin dependent regulator of chromat...	593.0	[0..28]	[528..1]
gi\|114644829 - gi\|114644829\|ref\|XP_001155833.1\| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regula...	592.0	[0..59]	[528..163]
gi\|109096584 - gi\|109096584\|ref\|XP_001111244.1\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-depen...	590.0	[0..59]	[528..163]
gi\|109482871, gi... - gi\|62653062\|ref\|XP_343333.2\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent...	590.0	[0..59]	[528..39]
gi\|50806703 - gi\|50806703\|ref\|XP_424488.1\| PREDICTED: similar to SMARCD1 protein [Gallus gallus]	590.0	[0..10]	[528..217]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ  60
   61 AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT TPGSLNMKRF QQKPPMRPPG 120
  121 APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [179-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTRKKVDIQ EALKNPPCIQ KTLRIYVFNS FANQNNTIPG NPNADPPTWT LKIIGRILED  60
   61 GVDPDQPGFV QKANPLHP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [257-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFSSFFKRVT VSLDQRLYPE NPLIIWENAR SPAPQEGFEI KRKGNQEFAA SIRLEMNYVP  60
   61 EKFKLSTALM DVLGIEVETR PRIIAAIWHY VKARKLQNPN DPSFFNCDAA LQKVFGEEKL 120
  121 KFTMVSQKIS HHLSPPPPIH LEHKIKLSGN NPAVSACYDV LVDVPFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1v31A
Description:	Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g14170 from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [424-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQRDLNNLLA NAEKNKEIEA CDEAICAAIR KIHEHRRRRA FFLGFSQSPV EFINALIESQ  60
   61 SKDLKVVAGE ASRNAERERR SDFFNQPWVE DAVIRYLNRR PAAGNDGPGS W

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.919	N/A	N/A	a.24.26	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits