| Protein: | SNF12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 534 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
598.0 | [0..22] | [528..1] |
|
|
593.0 | [0..28] | [528..1] |
|
|
592.0 | [0..59] | [528..163] |
|
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590.0 | [0..59] | [528..163] |
|
|
590.0 | [0..59] | [528..39] |
|
|
590.0 | [0..10] | [528..217] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ 60
61 AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT TPGSLNMKRF QQKPPMRPPG 120
121 APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDA
|
| Detection Method: |  |
| Confidence: | 12.0 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
|
Region A: Residues: [179-256] |
1 11 21 31 41 51
| | | | | |
1 ALTRKKVDIQ EALKNPPCIQ KTLRIYVFNS FANQNNTIPG NPNADPPTWT LKIIGRILED 60
61 GVDPDQPGFV QKANPLHP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.451 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.419 | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.375 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.302 | d.28.1 | Ribosomal protein S19 |
| View | Download | 0.294 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
|
Region A: Residues: [257-423] |
1 11 21 31 41 51
| | | | | |
1 KFSSFFKRVT VSLDQRLYPE NPLIIWENAR SPAPQEGFEI KRKGNQEFAA SIRLEMNYVP 60
61 EKFKLSTALM DVLGIEVETR PRIIAAIWHY VKARKLQNPN DPSFFNCDAA LQKVFGEEKL 120
121 KFTMVSQKIS HHLSPPPPIH LEHKIKLSGN NPAVSACYDV LVDVPFP
|
| Detection Method: | |
| Confidence: | 25.154902 |
| Match: | 1v31A |
| Description: | Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g14170 from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [424-534] |
1 11 21 31 41 51
| | | | | |
1 IQRDLNNLLA NAEKNKEIEA CDEAICAAIR KIHEHRRRRA FFLGFSQSPV EFINALIESQ 60
61 SKDLKVVAGE ASRNAERERR SDFFNQPWVE DAVIRYLNRR PAAGNDGPGS W
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.919 | N/A | N/A | a.24.26 | Description not found. |
| View | Download | 0.901 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.862 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.851 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.843 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.810 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.682 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.476 | N/A | N/A | a.24.23 | Description not found. |
| View | Download | 0.465 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.431 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.428 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
