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View Structure Prediction Details

Protein: gi|110736326, gi...
Organism: Arabidopsis thaliana
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110736326, gi....

Description E-value Query
Range
Subject
Range
gi|76633747 - gi|76633747|ref|XP_881817.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
309.0 [0..86] [497..11]

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Predicted Domain #1
Region A:
Residues: [1-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKKSKVTE PESQNDESQT IFSTLFSGEV ESSGFASLFS ADNPFRRKQP QEIKESSIPD  60
   61 EKKGDKRNAE NEEEEEETDL PVKTKKSKKE KKLTDSGDEK ETISEAVEES GLVSKRKKRK 120
  121 RDEIENEYET KKYGSVEMKE KKVGEKRKKA DEVADTMVSK EGFDDESKLL RTVFVGNLPL 180
  181 KVKKKVILKE FSKFGEVESV RIRSVPIVDS KRTRKGAIML KQINEKASSV HAYVVFETEQ 240
  241 SAAASLAHNM SLIDGNHVRV DRACPPRKKQ KGHDDTHLYD PKRTVFMGNL PFDVKDEEVY 300
  301 QLFTGKSNLE NSIEAVRVIR DPHLNIGKGI AYVLFKTREA ANLVLKKGYL KLRERELRIS 360
  361 RVKPDTPSKR KSNPSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.09691
Match: 2ghpA
Description: No description for 2ghpA was found.

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [377-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYSPAQKRLQ KDKVVTPTPT GKANLSYQGV RASKSGDDKK TPYQKSSAQT KMRPRGSSSN  60
   61 DNKKSGNNSA SKERSQKRPA VAARKAKANA KGSKESGGKR FAGTKRKQEN RTPESFSKKK 120
  121 KTKRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 2g4bA
Description: No description for 2g4bA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle