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View Structure Prediction Details

Protein: gi|7486987, gi|1...
Organism: Arabidopsis thaliana
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7486987, gi|1....

Description E-value Query
Range
Subject
Range
gi|21593641 - gi|21593641|gb|AAM65608.1| putative senescence-associated protein 12 [Arabidopsis thaliana]
551.0 [0..1] [452..1]
gi|92867777, gi|... - gi|92894544|gb|ABE92269.1| IMP dehydrogenase/GMP reductase [Medicago truncatula], gi|92867777|gb|ABE...
473.0 [0..1] [438..1]
gi|37360006 - gi|37360006|dbj|BAC97981.1| mKIAA0610 protein [Mus musculus]
447.0 [0..2] [451..178]
gi|7513042, gi|3... - pir||T00255 hypothetical protein KIAA0610 - human (fragment), gi|3043744|dbj|BAA25536.1| KIAA0610 p...
446.0 [0..3] [451..169]
gi|109120464, gi... - gi|109120470|ref|XP_001083012.1| PREDICTED: similar to spartin isoform 4 [Macaca mulatta], gi|109120...
445.0 [0..3] [451..149]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSGDKQTS SLYPTVDTSN PEAPINPSSS SSTNNLYPSL DMNDLARNLF PEQPETSSIP  60
   61 VSAPPAATEE VILKISGAIL HLIDKSYSVE LACGDLEIIR IVQGENVVAV LASVSDEIQW 120
  121 PLTKDENSVK VDESHYFFTL RPTKEISHDS SDEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDGGKNTNE MLNYGLTIAS KGQEHLLVEL EKILEDYSSF SVQEVSEEAK EAGEKVLDVT  60
   61 VARETSPVEL TGERKEIVER QCSAYWTTLA P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVEDYSGKAA KLIATGSGHL IKGILWCGDV TMDRLIWGNG FMKRRLSKAE KESEVHPDTL  60
   61 KRIRRVKRMT KMTESVANSI LSGVLKVSGF FTSSVANTKV GKKFFSLLPG EVILASLDGF 120
  121 NKVCDAVEVA GRNVMSTSST VTTELVDHKY GGKAAEATNE GLDAAGYALG TAWVAFKIRK 180
  181 AINPKSVLKP STLAKTAIRS AASQKKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle