YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7486987, gi|1...
Organism: Arabidopsis thaliana
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7486987, gi|1....

Description E-value Query
Range
Subject
Range
gi|21593641 - gi|21593641|gb|AAM65608.1| putative senescence-associated protein 12 [Arabidopsis thaliana]
551.0 [0..1] [452..1]
gi|92867777, gi|... - gi|92894544|gb|ABE92269.1| IMP dehydrogenase/GMP reductase [Medicago truncatula], gi|92867777|gb|ABE...
473.0 [0..1] [438..1]
gi|37360006 - gi|37360006|dbj|BAC97981.1| mKIAA0610 protein [Mus musculus]
447.0 [0..2] [451..178]
gi|7513042, gi|3... - pir||T00255 hypothetical protein KIAA0610 - human (fragment), gi|3043744|dbj|BAA25536.1| KIAA0610 p...
446.0 [0..3] [451..169]
gi|109120464, gi... - gi|109120470|ref|XP_001083012.1| PREDICTED: similar to spartin isoform 4 [Macaca mulatta], gi|109120...
445.0 [0..3] [451..149]

Back

Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSGDKQTS SLYPTVDTSN PEAPINPSSS SSTNNLYPSL DMNDLARNLF PEQPETSSIP  60
   61 VSAPPAATEE VILKISGAIL HLIDKSYSVE LACGDLEIIR IVQGENVVAV LASVSDEIQW 120
  121 PLTKDENSVK VDESHYFFTL RPTKEISHDS SDEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDGGKNTNE MLNYGLTIAS KGQEHLLVEL EKILEDYSSF SVQEVSEEAK EAGEKVLDVT  60
   61 VARETSPVEL TGERKEIVER QCSAYWTTLA P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.559 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.559 a.24.7 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View Download 0.552 a.24.3 Cytochromes
View Download 0.552 a.24.3 Cytochromes
View Download 0.530 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.529 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.504 a.42.1 MDM2
View Download 0.458 a.24.3 Cytochromes
View Download 0.345 a.8.3 Families 57/38 glycoside transferase middle domain
View Download 0.338 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.268 c.47.1 Thioredoxin-like
View Download 0.240 a.126.1 Serum albumin-like
View Download 0.210 a.16.1 S15/NS1 RNA-binding domain

Predicted Domain #3
Region A:
Residues: [246-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVEDYSGKAA KLIATGSGHL IKGILWCGDV TMDRLIWGNG FMKRRLSKAE KESEVHPDTL  60
   61 KRIRRVKRMT KMTESVANSI LSGVLKVSGF FTSSVANTKV GKKFFSLLPG EVILASLDGF 120
  121 NKVCDAVEVA GRNVMSTSST VTTELVDHKY GGKAAEATNE GLDAAGYALG TAWVAFKIRK 180
  181 AINPKSVLKP STLAKTAIRS AASQKKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle