YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25407290, gi\|...
Organism:	Arabidopsis thaliana
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25407290, gi|....

Description	E-value	Query Range	Subject Range
gi\|49526652 - gi\|49526652\|emb\|CAG60279.1\| unnamed protein product [Candida glabrata] gi\|50289821, gi\|... - gi\|50289821\|ref\|XP_447342.1\| hypothetical protein CAGL0I02090g [Candida glabrata CBS138], gi\|4952665...	255.0	[0..52]	[365..797]
gi\|50729132 - gi\|50729132\|ref\|XP_416442.1\| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog; RNA ...	205.0	[0..211]	[380..174]
gi\|27754568 - gi\|27754568\|gb\|AAO22731.1\| unknown protein [Arabidopsis thaliana]	180.0	[0..220]	[381..1]
gi\|55667209 - gi\|55667209\|ref\|XP_520809.1\| PREDICTED: SRB7 suppressor of RNA polymerase B homolog isoform 2 [Pan t...	175.0	[0..243]	[381..2]
tr\|M3X3Y9\|M3X3Y9... - Mediator complex subunit 21 OS=Felis catus GN=MED21 PE=4 SV=1 gi\|149714050 - gi\|149714050\|ref\|XP_001502847.1\| PREDICTED: similar to SRB7 [Equus caballus] gi\|73996918 - gi\|73996918\|ref\|XP_852318.1\| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog isofo...	173.0	[0..243]	[380..2]
MED21_MACFA - Mediator of RNA polymerase II transcription subunit 21 OS=Macaca fascicularis GN=MED21 PE=2 SV=1 CCDS8711.1_1 - null gi\|109096038 - gi\|109096038\|ref\|XP_001099368.1\| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog [...	173.0	[0..243]	[380..2]
gi\|114645559 - gi\|114645559\|ref\|XP_001143632.1\| PREDICTED: SRB7 suppressor of RNA polymerase B homolog isoform 1 [P... MED21 - mediator complex subunit 21 gi\|208966724, gi... - gi\|208966724\|dbj\|BAG73376.1\| mediator complex subunit 21 [synthetic construct], gi\|167774049\|gb\|ABZ9...	173.0	[0..243]	[380..2]
MED21_BOVIN - Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE=2 SV=1	172.0	[0..243]	[380..2]
MED21_MOUSE - Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus GN=Med21 PE=1 SV=1	172.0	[0..243]	[379..2]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNSYYSSA SSSGFRVCPP GVPSKCWCGE EIITFTSKTK ENPYRRFYRC AIAMKRENEE  60
   61 HLFKWVDEAL LDEIKMVNEK CKRVVENISD LRMNVMANME LLNKNAKQME EELIKKMEGE 120
  121 LLTMKENVEE LGHVMAKSAL KTVGVAVVIV ASIVWLW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRVRFKETTE IVPYEFYGIR AQKSKGKATL KAHFKNLRAQ TQNAERSLLR TTKRPNSQRL  60
   61 SVVATPNRLC VAGEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [233-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSTGLLRFWK MDIISQLQEQ VNTIAAITFN AFGTLQRDAP PVQLSPNYPE PPATTTVTDD  60
   61 ATPFPEQPKQ LSAGLVKAAK QFDALVAALP LSEGGEGAQL KRIAELQVEN DLVGQELQKQ 120
  121 LEAAEKELKQ VQELFGQAAD NCLNMKKPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1ykeB
Description:	Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits