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View Structure Prediction Details

Protein: gi|25407290, gi|...
Organism: Arabidopsis thaliana
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25407290, gi|....

Description E-value Query
Range
Subject
Range
gi|49526652 - gi|49526652|emb|CAG60279.1| unnamed protein product [Candida glabrata]
gi|50289821, gi|... - gi|50289821|ref|XP_447342.1| hypothetical protein CAGL0I02090g [Candida glabrata CBS138], gi|4952665...
255.0 [0..52] [365..797]
gi|50729132 - gi|50729132|ref|XP_416442.1| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog; RNA ...
205.0 [0..211] [380..174]
gi|27754568 - gi|27754568|gb|AAO22731.1| unknown protein [Arabidopsis thaliana]
180.0 [0..220] [381..1]
gi|55667209 - gi|55667209|ref|XP_520809.1| PREDICTED: SRB7 suppressor of RNA polymerase B homolog isoform 2 [Pan t...
175.0 [0..243] [381..2]
tr|M3X3Y9|M3X3Y9... - Mediator complex subunit 21 OS=Felis catus GN=MED21 PE=4 SV=1
gi|149714050 - gi|149714050|ref|XP_001502847.1| PREDICTED: similar to SRB7 [Equus caballus]
gi|73996918 - gi|73996918|ref|XP_852318.1| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog isofo...
173.0 [0..243] [380..2]
MED21_MACFA - Mediator of RNA polymerase II transcription subunit 21 OS=Macaca fascicularis GN=MED21 PE=2 SV=1
CCDS8711.1_1 - null
gi|109096038 - gi|109096038|ref|XP_001099368.1| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog [...
173.0 [0..243] [380..2]
gi|114645559 - gi|114645559|ref|XP_001143632.1| PREDICTED: SRB7 suppressor of RNA polymerase B homolog isoform 1 [P...
MED21 - mediator complex subunit 21
gi|208966724, gi... - gi|208966724|dbj|BAG73376.1| mediator complex subunit 21 [synthetic construct], gi|167774049|gb|ABZ9...
173.0 [0..243] [380..2]
MED21_BOVIN - Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE=2 SV=1
172.0 [0..243] [380..2]
MED21_MOUSE - Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus GN=Med21 PE=1 SV=1
172.0 [0..243] [379..2]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNSYYSSA SSSGFRVCPP GVPSKCWCGE EIITFTSKTK ENPYRRFYRC AIAMKRENEE  60
   61 HLFKWVDEAL LDEIKMVNEK CKRVVENISD LRMNVMANME LLNKNAKQME EELIKKMEGE 120
  121 LLTMKENVEE LGHVMAKSAL KTVGVAVVIV ASIVWLW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRVRFKETTE IVPYEFYGIR AQKSKGKATL KAHFKNLRAQ TQNAERSLLR TTKRPNSQRL  60
   61 SVVATPNRLC VAGEI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [233-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSTGLLRFWK MDIISQLQEQ VNTIAAITFN AFGTLQRDAP PVQLSPNYPE PPATTTVTDD  60
   61 ATPFPEQPKQ LSAGLVKAAK QFDALVAALP LSEGGEGAQL KRIAELQVEN DLVGQELQKQ 120
  121 LEAAEKELKQ VQELFGQAAD NCLNMKKPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 1ykeB
Description: Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle