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View Structure Prediction Details

Protein: gi|6562258, gi|1...
Organism: Arabidopsis thaliana
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6562258, gi|1....

Description E-value Query
Range
Subject
Range
SHI_ARATH - Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1
236.0 [0..1] [248..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSEAWLW YRNPNVNANA NTNVNANAPS  60
   61 SSNAALGTLE LWQNHNQQEI MFQHQQHQQR LDLYSSAAGL GVGPSNHNQF DISGETSTAG 120
  121 AGRAAAMMMI RSGGSGGGSG G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [142-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSCQDCGNQA KKDCSHMRCR TCCKSRGFEC STHVRSTWVP AAKRRERQQQ LATVQPQTQL  60
   61 PRGESVPKRH RENLPATSSS LVCTRIPSHS GLEVGNFPAE VSSSAVLGAC V

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.259637
Match: PF05142.3
Description: No description for PF05142.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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