| Protein: | CDT1B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDT1B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
226.0 | [0..1] | [484..26] |
|
Region A: Residues: [1-274] |
1 11 21 31 41 51
| | | | | |
1 MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL 60
61 DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK HIYPEAIELK RVLKFVEDTC 120
121 CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS 180
181 PQRDSYSGIV SVGLGEPKLE VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK 240
241 DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPE
|
| Detection Method: |  |
| Confidence: | 30.30103 |
| Match: | 1wlqC |
| Description: | Strucure of Geminin-Cdt1 complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [275-486] |
1 11 21 31 41 51
| | | | | |
1 GGDDNSLRST NSLARGPSRS LNFDTFEEDA IEKDDIGNES DDKGINYEED GLLQSVKGPS 60
61 RSLNFDTLEE ETIVKDDISN ESGDEKSNYE GDNASDDDSL LQSMIERPKT EPEKHNLPQL 120
121 VNLIHRVFHS TNRTVITKEE LLYKIIANQI NITDRREVEE QLSLMLQLVP DWISETKASS 180
181 GDLLVRINKM STAETVRARL EEATSHDISL IY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
