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View Structure Prediction Details

Protein: gi|6580153, gi|1...
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6580153, gi|1....

Description E-value Query
Range
Subject
Range
gi|5821294 - gi|5821294|dbj|BAA83905.1| SRK13 [Brassica oleracea]
495.0 [0..4] [470..10]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKFYTFTF LICLFSKLQG HCKSDISLGN SLTLTSPLEY TPGFMGKAYI IETESSSTRE  60
   61 PGFKAALTME SSDKDDGRYL CSLQIFLGDV RVWSSGHYSK MYVSSKCIIE LTKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLRLKSSYK HVGWRSGTSG QGVERLEIQS TGNLVLVDAK NLIKWQSFNF PTDVMLSGQR  60
   61 LDVATQLTSF PNDSTLFYSF EVLRDKIALF LNLNKLKYSY WEYKPREKNT TVNFVRLGLK 120
  121 GLDLFDDNSR IIGRIEQPLI RFLALGNRTG NLGLYSYKPE KGKFEATFQA VS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [287-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTCDLPVACK PYGICTFSKS CSCIKVVSNG YCSSINGEEA VSVKRLCDHE MVELNGVTTV  60
   61 LRNGTQVRNI SKERCEELCK KDCECGAASY SVSEESCVMY GIVMGVKQIE RVSGLSYMVK 120
  121 IPKGVRLSDE KSNVRKWVVG LVGGIDGFVI LLLISGFAFY FIRKRRKSLL LPPPPPPPPP 180
  181 LSQQPANTDS 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 2qtsA
Description: No description for 2qtsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle