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View Structure Prediction Details

Protein: gi|6580153, gi|1...
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6580153, gi|1....

Description E-value Query
Range
Subject
Range
gi|5821294 - gi|5821294|dbj|BAA83905.1| SRK13 [Brassica oleracea]
495.0 [0..4] [470..10]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKFYTFTF LICLFSKLQG HCKSDISLGN SLTLTSPLEY TPGFMGKAYI IETESSSTRE  60
   61 PGFKAALTME SSDKDDGRYL CSLQIFLGDV RVWSSGHYSK MYVSSKCIIE LTKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLRLKSSYK HVGWRSGTSG QGVERLEIQS TGNLVLVDAK NLIKWQSFNF PTDVMLSGQR  60
   61 LDVATQLTSF PNDSTLFYSF EVLRDKIALF LNLNKLKYSY WEYKPREKNT TVNFVRLGLK 120
  121 GLDLFDDNSR IIGRIEQPLI RFLALGNRTG NLGLYSYKPE KGKFEATFQA VS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [287-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTCDLPVACK PYGICTFSKS CSCIKVVSNG YCSSINGEEA VSVKRLCDHE MVELNGVTTV  60
   61 LRNGTQVRNI SKERCEELCK KDCECGAASY SVSEESCVMY GIVMGVKQIE RVSGLSYMVK 120
  121 IPKGVRLSDE KSNVRKWVVG LVGGIDGFVI LLLISGFAFY FIRKRRKSLL LPPPPPPPPP 180
  181 LSQQPANTDS 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 2qtsA
Description: No description for 2qtsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle