YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110738709, gi...
Organism:	Arabidopsis thaliana
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110738709, gi....

Description	E-value	Query Range	Subject Range
gi\|15232004, gi\|... - gi\|6403486\|gb\|AAF07826.1\|AC010871_2 unknown protein [Arabidopsis thaliana], gi\|5923667\|gb\|AAD56318.1...	361.0	[0..1]	[406..1]
gi\|34899808, gi\|... - gi\|34899808\|ref\|NP_911250.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|27817893\|d...	250.0	[0..77]	[400..290]
gi\|85719350 - gi\|85719350\|gb\|ABC75355.1\| Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-...	248.0	[0..41]	[400..219]
gi\|73990612 - gi\|73990612\|ref\|XP_542803.2\| PREDICTED: similar to Alpha-1,4-N-acetylglucosaminyltransferase (Alpha4...	241.0	[0..88]	[399..112]
gi\|109732015, gi... - gi\|94387522\|ref\|XP_997716.1\| PREDICTED: similar to Alpha-1,4-N-acetylglucosaminyltransferase (Alpha4...	241.0	[0..86]	[398..15]
gi\|220955278, gi... - gi\|220955278\|gb\|ACL90182.1\| alpha4GT1-PA [synthetic construct], gi\|220945468\|gb\|ACL85277.1\| alpha4GT... alpha4GT1-PA - The gene Ã?Ã?Â±4GT1 is referred to in FlyBase by the symbol Dmel\Ã?Ã?Â±4GT1 (CG17223, FB...	234.0	[0..77]	[399..30]
gi\|109485257, gi... - gi\|109485257\|ref\|XP_001070727.1\| PREDICTED: similar to Alpha-1,4-N-acetylglucosaminyltransferase (Al...	234.0	[0..86]	[398..80]
gi\|76616924 - gi\|76616924\|ref\|XP_875794.1\| PREDICTED: similar to Lactosylceramide 4-alpha-galactosyltransferase (A...	233.0	[0..123]	[398..119]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRHDIEKRF TVVIDNRRLN QSGSSSLFTA FAISFVTLIV VTTFTLISNF SMQPHRDFSG  60
   61 VKIEIKRVIP HLPLSSEREG ERSDLLKQQT QVNEKLQVIE VFSGDNLSDK FQKRVNEFVG 120
  121 DGCEVNFVMT WISPADFFGN REVLAIESVF KSHPY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCLMILSATM DSPQGYATLK PFIDRGYKVL AVTPDLPFLL KGTAGELWLD EIKSGKRDPG  60
   61 KISLAQNLSN LMRLAYLYKY GGVYLDTDMI VLKSFKGLRN VIGAQT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.366532
Match:	PF04488.6
Description:	No description for PF04488.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [262-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPSSTNWTR LNNAVLIFDK NHPLLLKFME EFAKTFNGNI WGYNGPYLVS RVARAVEGSS  60
   61 GYNFTVMRPS VFYSVNWLEI KKLFKVPKTE KDSKWVKTKL LHMQRNGYGL HLWNKFSRKY 120
  121 EIEQGSAMWK LVSEHCIICE ISSVSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.200659
Match:	PF04572.3
Description:	No description for PF04572.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits