YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Y5758_ARATH
Organism: Arabidopsis thaliana
Length: 548 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5758_ARATH.

Description E-value Query
Range
Subject
Range
gi|50881433 - gi|50881433|gb|AAT85278.1| NPH3 family protein [Oryza sativa (japonica cultivar-group)]
gi|125545026 - gi|125545026|gb|EAY91165.1| hypothetical protein OsI_012398 [Oryza sativa (indica cultivar-group)]
461.0 [0..2] [539..50]
gi|102139797 - gi|102139797|gb|ABF69982.1| nonphototropic hypocotyl 3 (NPH3) family protein [Musa acuminata]
451.0 [0..2] [537..68]
gi|241941352, gi... - gi|242080467|ref|XP_002445002.1| hypothetical protein SORBIDRAFT_07g002590 [Sorghum bicolor], gi|241...
446.0 [0..2] [532..23]
gi|25336228, gi|... - gi|6634762|gb|AAF19742.1|AC009917_1 Contains a bZIP transcription factor PF|00170 domain. ESTs gb|R...
441.0 [0..2] [536..20]
gi|92896715 - gi|92896715|gb|ABE93313.1| BTB/POZ; NPH3 [Medicago truncatula]
431.0 [0..2] [539..23]

Back

Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASYVSDLH INVKGVPFHL CKEMLAKRSS KVSSLLERNE IDELRLILRD LEVDPETFEL  60
   61 VARFCNGSEF KFTSDTIVSV LCIAYYLGMN EEQSSNNLLG KASEFLEHRV FPSWSETINA 120
  121 LRSGDKSFDK LADVGLVDVF FDSLIEKASY DPRLLGE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [158-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIKNRAETDD YRPNPRRRLF VIDWKSEDLI TIPLRLYEPF MIRAIKSRSI PVEYIVLSVC  60
   61 KYAKKWVFDT EESLSGQKRE AIEVVERL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [246-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPYQRGLISC ELLFESLKHS IWLEASSECQ NGFMIRICKQ LDMAKSTDLK ILSRGYGEKA  60
   61 EGFENIELVK TVVKSFYTYY ANEDSETVSH FVKVAKLSEE FLFLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 2dyhA
Description: No description for 2dyhA was found.

Predicted Domain #4
Region A:
Residues: [351-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASEASLKLEA FVELAEMTVA VSQGILSYSD GIYRAIDVFL ESHRYLTESE KMEVCKVLEC  60
   61 GKLSQEGFER AAKNQKLPLR IVVNVLCVSQ LQIRDTVAKE I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [452-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGMEEKVDEE EEEEIEVSSD EDEMEKMSNK LLGLEIENDE CVVHRRKNMK KKKKKISVWG  60
   61 QVKRKFGCLN SSSSSYSVDA CTCDVKKKKK KIHHHYE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle