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View Structure Prediction Details

Protein: gi|7460037, gi|7...
Organism: Arabidopsis thaliana
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7460037, gi|7....

Description E-value Query
Range
Subject
Range
gi|71905527, gi|... - gi|71905527|gb|AAZ52741.1| hypothetical protein At4g29200 [Arabidopsis thaliana], gi|60547869|gb|AAX...
338.0 [0..150] [457..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICVPGPIIE ALSSTTLSGA GEASVHRHRD PNFSSFRRYF VTLVSFFIFP LLKLFPILSP  60
   61 LVIPLVIPAH NLLTNLPHLA SLPGRSSTQI KEGRLKQHAL SFSHSSAAAL WTDSCSELSH 120
  121 VEKDATPWIF ATYLSHGHSL LPTIFHSSEM TPALQIISPF LDSRRSTSAF WHLDMKLGFS 180
  181 PVDLVSFAGP F

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [192-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPFRPKPICC FRTCKAFILR SDFFNSMLGP LIFLCRSPLI NGHGHHLIEI SPWRFWFFIY  60
   61 HLRILVLAIS RNVWPHSKVL KTFSLIFLNC TCLCVKCGFE LWVFIAQWSP SSSSIAFKLI 120
  121 TMSIIMFHCL IVYAAIDRRF VCLLCWILKL TL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDYRTIVLRI LAILFPWVLQ LAPVRSIASM SLSTSLRPLT VTNLLSFDYF EDDPSIYCDL  60
   61 TCCTVLLCLC LKALMEFKSM HFIFLFMVLG NTVCCNALIF EFLNSISCNC SMFH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle